Detail information of GWHGAAEX010898/evm.TU.scaffold_33.80
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 3.00E-18 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|695072905|ref|XP_009383597.1| | 0 | PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9LUL4|SRF7_ARATH | 0 | Protein STRUBBELIG-RECEPTOR FAMILY 7 (Precursor) |
| trEMBL | tr|M0RRU6|M0RRU6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P13160_001} |
| TAIR | AT1G53730 | 0 | STRUBBELIG-receptor family 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000044 | 2218046 | 2278981 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010898
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 27 | 67 | 2.20E-08 |
| PF13855.5 | LRR_8 | 159 | 201 | 1.30E-07 |
| PF07714.16 | Pkinase_Tyr | 419 | 691 | 3.10E-39 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-V |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 70.880 |
| SRR2545915 | Juvenile tuber | 150.070 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 73.040 |
| SRR5643514 | five period of Gastrodia elata | 72.290 | |
| SRR5643515 | five period of Gastrodia elata | 91.360 | |
| SRR5643524 | five period of Gastrodia elata | 82.140 | |
| SRR5643525 | five period of Gastrodia elata | 73.820 | |
| SRR5643528 | five period of Gastrodia elata | 95.020 | |
| SRR5643658 | five period of Gastrodia elata | 99.280 | |
| SRR5643659 | five period of Gastrodia elata | 110.000 | |
| SRR5643660 | five period of Gastrodia elata | 93.090 | |
| SRR5643661 | five period of Gastrodia elata | 107.050 | |
| SRR5643662 | five period of Gastrodia elata | 85.720 | |
| SRR5643663 | five period of Gastrodia elata | 137.630 | |
| SRR5643664 | five period of Gastrodia elata | 80.150 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 81.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 63.580 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 85.410 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 81.390 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 81.540 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 87.570 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 84.420 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 80.470 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 109.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 96.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 66.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 66.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 93.03 |
| Juven | Juvenile tuber | 45.77 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 25.26 | |
| Mother_Juven | Mother tuber of Juvenile | 28.59 |