Gene detail

Detail information of GWHGAAEX010903/evm.TU.scaffold_33.87

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	7.00E-130	FOG: PPR repeat
nr	gi\|743840441\|ref\|XP_010937264.1\|	0	PREDICTED: pentatricopeptide repeat-containing protein At5g24830 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8L6Y3\|PP396_ARATH	2.00E-130	Pentatricopeptide repeat-containing protein At5g24830
trEMBL	tr\|A0A067KMB0\|A0A067KMB0_JATCU	7.00E-155	Uncharacterized protein {ECO:0000313\|EMBL:KDP33430.1}
trEMBL	tr\|A0A067KMB0\|A0A067KMB0_JATCU	2.00E-24	Uncharacterized protein {ECO:0000313\|EMBL:KDP33430.1}
TAIR	AT5G24830	7.00E-130	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000044	2591929	2612089	+

Transcript Sequence
>GWHTAAEX010903 GACTACACTTTCGATGCTAGAAGACCGATCCATCTCCCCTTCCCAACCCTAAGCCCAATCCTCTCGCCGGCGTTTGATGCACTTTACGACTGCCGTCATTTGGAAGTTTCTTCTTTTAAACCTTTCTCGTTAAATGGTGTCAGTTCTAGTGGGAGAAGATCTCCATCACATCATCATCAGGACGTTCTGTTCAGATCTAAGAAACATTCCTCTTATCCGTGCATTTAGAGATTTATTTTCCCAAGAATCCCAGTCTCCTTCTTCCGCCCGGACAAATGAGCGGCGGCCATATTCTGCAGTTGATAACGTCGTAATTACTGCAGAAGAACCAATTCGGGTCAGTTCGGAAGATTGGTTCTTGAAGTCAAATAAACATCAAGATTTTCAGAATGATGGAGATCCTAATCTTGTTTATAATGTTTTGGATTCTGTTATTGTTGGAACTTTGGAGCGGCTGAAGAAATTGAGGGAAAGTATCTTTCTTGTTGGCAGGTGTAATTTATATGGAGGAACTAGTAATCTGAATTCCAATCAGAAGTTTAAACCTGCCTCTGAGATTGATTGTTTGCTAATTAGGAATTATTGTATCGACAAAAAGGTAGAAGATGCTTTACTGTTGCATGAAAAGTTACTGCAGCGTCATGTAATACCGGATTTACATACACATATTGTTTTTATGAATGCACTTTGTAAGGCTGGTCACTTGTGGACTGCAGCCTGGATTCTAGATTTGATGCCAAAAGTTGGGATTTTACCTAATAATGTAACATATAACACACTTATTGACGGATATTGTCGTTCAGGTAATATAGATAAAGCCCTACATCTGTTTTCATCGATGTATCACAATGGAGTAAAAGCCACTATTGTCACTTGCAATATACTTGTCCATGCATTGTGCAAAGAGGGACTTATAGACAAAGCAAAGGAACTCTTGGATGAGATATTAGATGAGAACATAGCTGCAAATTTAATAACCGCAACAATTTTTATTGATGGAAGCTGTCGGAAAGGGGATTTGAAACATGCACTTGAGCTCTGGAATGATATGTTTATTAAGGGATTAAGCGTTGATCGTGTTGCATATAATGTGCTTATTAATGGGTTTTCTTTGGTTCAAAAAACACCGCTTGCATATAGATACATTTGTGACATGTGCAAAAGAGGTTTTCTTCCTGATATTGTAACCTTTAACACTCTTATTAGTGGTCATTTTAAGGAAGGGAATATTAATGAAGCATGTGAAATGCACAGGAAGATGACGCTTTTTGGTGTTCTGCCAGACCATATCTCATACAGGATGCTCATTTTGGGTCTTTATATACATGACGCATTATTCAGAGCTATCGAGTTATTTCAAAATATGCTGAGTGCTAAGATGATACCCAAACCTCTAATTTGGAACCTCATCATGAATGGCTATGCAAAGCTTGGTGACATCGATCGAACCAATTTGTTGAGATATACGATGGTGTCATGGGGGGTGCTTCCCAATACATTCACCTATAATGCATTGATTCTTGCGGAGCTGAAAGGAGGGAAGGTAGTTCGAGCTATATCTCTTAAGGAAGAGATGATTTATCGGGGGGTATTTCCTGACGTAGTCACATATAACATGCTAATTCATGCTGCATGTAGCATTGGTTACACTAATCATGCAAATAGTTTACTTCATGAAATGTTAAACCGAGGCTATAAGCCTGATGTCATCACCTACACGGAGTTAATTAGAGGCTACTGTTTAAAGGGAGAACTGCAGAAAGCTGAAGATATCCTCAGCAAGTTAGAGCGAATATCTTATTGTACCGTTGACCATGTACCATTTCAAATAATCATCAAACATTATTGTAGAAGGGGAAATGTTGTAGAGGCATACAAGGTTTATGAGAAAATGTTAAGCAAAGGTCTAGTTGCTAGACATTCCATGTATTATTCATTGTTGACAGAGCTAATGAAGGGAGGGTATCATCTTGAAGCTAGTTTAGTTTATGATAAAATGAATGGTTTGGCCCTACAAAGATTCAAAGACACGGGCTCAATAGAGTAACGTTTCATTAGGCGTTAATAAAAGCTGGTTTTTAGGCATTAAGGAACAAAGTTGACACATCAGATGTATTTTTAATTTTTAACTGATGTGTGTTTGTTTCGAAGAACTTGAAAGGATTATCGGCCACATAGGATTCTTTATACTCTTCAGCTGAACTTTTATCATGCTCATTAAGGTGCATAGCTTAAACTGGCATAACTAAATGGGTTGTTAGTAGTTGAACTTAGACCAATCATATTCTGAACTAAGATGAAAGCTACGTTATCGTACTCATTGTTGCTCATTATTAGTGTTTGCTTGTATGCCAAGATGGTATTTCAAGCCACAAAGTCAAATTAAGGGTGATGAAAGAATATTCTGAGCGATTTGGCAGCCCTTGCTTCCATTCATAATTGTTGCTGCGTTATTTTTGTGAGAACTCAATTGCTGCAGCCACCATGGTTTCAGAATTAACATCACCATTTTATTCTGGGATCCTAATCACTGGCAAATTTCCTGTACATAGCTGCCTGGTGTGCTAGGGTAGAGTGCTTCGCCCGAATCTTGTCTTGCCAACGCAGAGCCGCGCCTCGATGAGCCGACACAGAGGGCCTGTTCCGCTGTTTCGCCTGAATCTCGCCCCGCCTCGACGAGCTGACACAGAGCGTCTGTTCCGCTGTTTCGCCTGAATCTCTCCTCGCTTCGCCCGAATCTTTGCCGAATCTTGCATCGCGACAATCTGCAGGCTAGGCAAGAATGGTACGGTAATTGTCTCTTCAAGCTAGTTGCAAACTCCAGAACTTCATTTTGTTGGAACGATGAAGTGCAAAATGCTTGGGTGGGACAATGCATGTGTTCTTGCGACATCAGGGCTTCAAACTTAGAGTATTGCGGCCTTTAGTTTTAGCTAGTGTTTTTTTGTTGGTCCGGTGTGTGCATCGGGCAGGCAATTATTTTCCTGAAATATGGCCGTAGCCTAAGTATATATATATATATATAAATGCATCAGTATAAATCAACCGGGATCAAACCCCACGGTCTATGCGGCAAGGAGGTTCAAAAGCCTTCCGGGGAGCACATCTCCTCTAACAAAGCAAACATTTCCTTGTCGGGCATACATCGCACAAAAATCATCTACCTGATTTGCATTGCGCGATCGAGGGACAACAATAACACGAGGAAGATCCAACAGGAAAGTAAGGTGATCAGCATGACGCTCTCCGCCCAATGAACGGAGAGTCCTCTCTTAGTGACCTTGGAGCCTTCTGAACGCTCCAAAGCAGTCGCTCTCAATGATGTCTATCAGTATCTGTATCTTTGGTCATGCGGGCCTGACGGAGAATGATAATCGGCTGCATCTCCGCCTGAAGGGGAGACAGGGCTTGAAGACGGGCTCCAATAGCAGCGAGCAAGTGCCCTCTTGAGTTGCGGACCACAGCATCACCAAAAGCAACAAGTTCTCCATAATTGTAGAAAGCGTCAATGTTGGCCTTCAGCTAACGGATTGGGGCACCATCTAAAGCAGGCAATTATTTTCAATAAGTTGCACATTGCATTTATTGAGATGTTGGGCATTGTAGCATTTCTCCAAATTGCATCTATGAGATAGTTTTGTAGCATGTTTTCAGATTTAACTGCTATTATACCAAACTTTTTTAGAATATAAGACTCAGGGTTTTTGAATCCAAATTTAAAGTATCTGTTAAATCCTACATACTCCCAAATAGTCCCTAAGATTTTGTTTTGTGATGCTTATTTTTTTCTCCATTTGTTTCTGAAACTGTTTTTTCAGCCATCATTTTTATTGTACTTGGAAAAC

Network for GWHGAAEX010903

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	181	206	0.47
PF13041.5	PPR_2	208	257	7.70E-17
PF13041.5	PPR_2	279	325	5.60E-10
PF13041.5	PPR_2	348	395	1.50E-11
PF01535.19	PPR	422	450	0.18
PF01535.19	PPR	456	486	0.0049
PF13041.5	PPR_2	488	536	7.90E-15
PF01535.19	PPR	565	592	7.30E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.200
SRP064423	SRR2545915	Juvenile tuber	7.410
SRP108465	SRR5643513	five period of Gastrodia elata	6.330
	SRR5643514	five period of Gastrodia elata	6.050
	SRR5643515	five period of Gastrodia elata	5.110
	SRR5643524	five period of Gastrodia elata	6.270
	SRR5643525	five period of Gastrodia elata	5.880
	SRR5643528	five period of Gastrodia elata	4.650
	SRR5643658	five period of Gastrodia elata	5.690
	SRR5643659	five period of Gastrodia elata	7.300
	SRR5643660	five period of Gastrodia elata	7.260
	SRR5643661	five period of Gastrodia elata	6.000
	SRR5643662	five period of Gastrodia elata	6.490
	SRR5643663	five period of Gastrodia elata	6.160
	SRR5643664	five period of Gastrodia elata	5.460
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.580
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.060
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.440
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.630
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.660
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.070
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.410
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.930
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.930
SRP279888	Gastro	Gastrodia elata tuber	5.75
	Juven	Juvenile tuber	9.78
	Mother_Gastro	Mother tuber of Gastrodia elata	5.34
	Mother_Juven	Mother tuber of Juvenile	7.10