Detail information of GWHGAAEX010920/evm.TU.scaffold_33.108
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3372 | 2.00E-96 | Signal peptidase complex subunit |
| nr | gi|743808396|ref|XP_010928329.1| | 8.27E-102 | PREDICTED: signal peptidase complex subunit 3B-like [Elaeis guineensis] |
| Swissprot | tr|Q53YF3|SPC3B_ARATH | 6.00E-97 | Signal peptidase complex subunit 3B |
| trEMBL | tr|I1NC08|I1NC08_SOYBN | 5.00E-101 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G42480.1} |
| TAIR | AT5G27430 | 2.00E-96 | Signal peptidase subunit |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000044 | 2877411 | 2913864 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010920
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04573.11 | SPC22 | 4 | 164 | 2.10E-54 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12948 | SPCS3, SPC3 | Protein export | map03060 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006465 | Biological Process | signal peptide processing |
| GO:0008233 | Molecular Function | peptidase activity |
| GO:0005787 | Cellular Component | signal peptidase complex |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 92.860 |
| SRR2545915 | Juvenile tuber | 99.180 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 104.170 |
| SRR5643514 | five period of Gastrodia elata | 103.200 | |
| SRR5643515 | five period of Gastrodia elata | 99.690 | |
| SRR5643524 | five period of Gastrodia elata | 112.390 | |
| SRR5643525 | five period of Gastrodia elata | 80.730 | |
| SRR5643528 | five period of Gastrodia elata | 101.930 | |
| SRR5643658 | five period of Gastrodia elata | 66.580 | |
| SRR5643659 | five period of Gastrodia elata | 86.680 | |
| SRR5643660 | five period of Gastrodia elata | 87.490 | |
| SRR5643661 | five period of Gastrodia elata | 92.740 | |
| SRR5643662 | five period of Gastrodia elata | 83.230 | |
| SRR5643663 | five period of Gastrodia elata | 90.460 | |
| SRR5643664 | five period of Gastrodia elata | 78.620 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 89.900 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 114.180 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 87.700 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 72.650 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 51.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 50.160 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 60.500 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 52.750 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 82.730 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 70.660 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 136.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 136.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 77.96 |
| Juven | Juvenile tuber | 82.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 77.02 | |
| Mother_Juven | Mother tuber of Juvenile | 93.13 |