Gene detail

Detail information of GWHGAAEX010927/evm.TU.scaffold_33.118

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|326502460\|dbj\|BAJ95293.1\|	2.59E-85	predicted protein [Hordeum vulgare subsp. vulgare]
Swissprot	tr\|Q0WUF6\|PUB41_ARATH	1.00E-42	U-box domain-containing protein 41
trEMBL	tr\|F2DJM2\|F2DJM2_HORVD	1.00E-85	Predicted protein {ECO:0000313\|EMBL:BAJ95293.1}
TAIR	AT5G62560	5.00E-42	RING/U-box superfamily protein with ARM repeat domain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000044	3219063	3222025	+

Transcript Sequence
>GWHTAAEX010927 AGTTACATGTATTTAGATATGGAGAGGGGAGTCTTTGGGCAGGCCTTCACTGTCATTGGACGAAGGAGATTGTATGATTAGAAGTATTTATGGAAGTATTGACTAGATCACAAAAGGATGCTACTCTCTTTTGTGTTAGCCAAAATGTATTCAATTGGCAGATACAACTGCATTTCATTCCCAAAGAAATCTTGTTTTGATTCAAATGCTATATCATAGATTATGATATAGTACAAATTTATTAAACTGTATTTCACATGATTTTTCTCCAAGGTCTATTCTTTTTCCTTAAATTCAACAACTCCTTCACATATTTACAAACCCATTACGTACTTAAAATTACTCTATAGCTATGCTCAAATCTACCTCCTTATGCTCTCTAACACTCTCATTTATGACGATAAAGAAAGTGAATATGAATAGGAAAATGCTAAACTTTAAGAAAATAGTTAAAAAAAAGTGTACTTGTATGAATATTCAATACACATCAAGAATATTTTCAACGTTCTCAGGAAATACAAATGTATCTCATAATTATCTCATAAAAAAGAATTGAATTTGTGAGGTTATTTTCTTATGCCACTGCTAGTTTGGGCTATATTTTTATTAGCCCCCACTGAAAAATGAGAGAATCGTATTCGATGGAAAACCAAAGTCTAAACATATAAAGATATTATACATATTGATTATTTTTAAGAATATACATTGGGGAAGAAATTGAACCCCAAAATTTGCCCTCTTAATCGAACATACCACTGATTTACATAAGGATATTTTCATAGCAGTGCAAATTTAAATGTATGAGAAAAAATTCAGTCAGCAGCTTTGCTTTATTTTAGGTAATTAAATGTAGTTATAATCCAATATATAAAGTAAAGAAGACATTCACTTAAAGCATAAAGGTGTTTCTATCTATGGTGGGCCTCAGAGCATTCATTGTGCTGAAGAAGACTTGGTTACTCAATGAATGATCCCTTGGCATCGCGAGGGGCTTCGTGCACACAGACAGACGCTGATCTATTGAGATTTTATTCTCTCTATCTCTCTCTATCTTCAGAGTAGTGAAGCTCTCTGTTTATTTTTACCTTCCAATCAATATTTCTACTTAAAATACTTTGTTCTAAGTTTCAAACCCTATAAATACTTCATGTGAAATAATACATTCTAAATAATCTCCATTAAAAAGAATACAGATAAATTATAAAGGTTTCGGCTGTGTGCCTTAAATGCTAAGCTTCAATTCAATCCGGCATGATATTTGTAATCCCTCCCTCCCTCCCTTTGGTGGACAAATTATTATTTTAACCTCTTTTTTCTATGATTTTCTTCTCCTCGCTTCAGATTAAAACATACAGTGTTCGCTCCTCCTCTGAGCAAACAAATCAAGAAAGCATGGGCCTTGTCCGAGACCGATGGAAGAAACTCTCCTTCCGGCGATCCTCCTTCCCCCCAGCTTCTCCTTCCCCTCCGACGTCCTCCAAGCCGTCGGATCCGCCGCCGGAGTTCCTCTGCCCTATCTCCGGCGTTCTGATGGCCGATCCCGTCATCATCTCCTCCGGGCAGACCTTCGAGCGCGCCTGCATCGAAGTTTCCTCGTCCCCGATCCTCATCCCCAACTCCGCCCTCCGCTCCGCTATCCTCCGCTGGTGCGACGCCGCTGGTTTCCCCCATCCCATTCCCCCTTCCTCCTCCTCCTCCTCTTCCTCCTCCTCTGAAATCCTCATAGAAGAACCGACGGCGATCCCTCCCGCTTCCGATCCGCTGGAAGAACACATCTTATTGAAGCTGGGCCAGATCCAGGAGCAGGAGGGCGCCCTGATGTCTCTCCTGGAAGCCACTAGGGAATCCCCTTCCCGGCGAGTCTCCCTGGGCGGCAGCCCCCGATTGCTGGCCGCCCTCCGCGGGCTCATCCTGTCCATCCATCCGGCCATCAGATCCGCCGCCCTGGCCGCGGTCGTGAACCTTTCCCTCGAAAGGGAGAACAAGGTCGGAATCCTGCGCTGCGGCGCCGTCCCCGCCATCGTCGACTCCCTTGGCCCGGCGTCCCCTGCGGCGGCTAGGGAGCACGCCGCCGGAGCCCTGCTCAGTCTGGCCGCGGAGGAGCAGAACCGCGCCGCCATCGGAGTCCTGGGGGCCGTCCCGCCTCTTTTGCACCTCTTCTGCTCGTCCGGGGAGAGCCTGCGGGCGAGGCTGGAGGCGGGGATGGCGCTGCAGTACCTGGGACTCGCGCAGATGAACGCGACCAAGCTCGCCAGGGTCGGAGGAGCCGTCAGAGAGCTGATCGCGGTGGCCGAGGGCGGCGAGCCGAAGCTGAGCGGGGCGGCCATGGGGCTCATGCTTGTACTGCTGAAATCCAAGGAAGGGAGGGCGGCCATGCTCGACGGGGGAGCAGTGGAGGCCGCCGTGGCGCTCTTGGGGAAAGACCCTGAGATGGGGATCAAGATACTGCACGGAATGAGCGCCGGAGGGCTTAGATTCAGGCCCATGGCGAGGGCGGCGGGGGCAGAGGAGGCGCTCCAGAGGGCCGCCGGCGACCAGAGCTTGGAAGCCGAGGCCAGGAAGATGGCCACCATCACCGTCGAGGTCCTGAGGGGCCGAGGGGACCGTGACGCCGCCAGGATTTTGTGGTGGGAGAAAGCTGAGGAAGGGATTCAGGAGAGAAATGCGGCGTCCGAGACGCTTTTGGATCGCCGGAGAAGGAATTCCGCCGCAGGTTCGCCTCCCAACTCTGCCGGATTCTGATTTCTGCCTTCCATCTTTGTTCTGGGCTTTTCTGTAATTTATGCCAACTCTCGTGTTATTATTTTTCTTCAAGTCGCGCCTTTCGACGACTCATGGGATCTTTCTGCTGTAAAGAACAACTTACTTTATTATTTTGATTATATAGTATACATATATATTAGAATGATTTTAAAACTGTGAAAATAATATAGTATTTATTTGTAAATATTAATAAGTCAAAT

Network for GWHGAAEX010927

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04564.14	U-box	60	90	8.60E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016567	Biological Process	protein ubiquitination
GO:0005515	Molecular Function	protein binding
GO:0004842	Molecular Function	ubiquitin-protein transferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.750
SRP064423	SRR2545915	Juvenile tuber	5.690
SRP108465	SRR5643513	five period of Gastrodia elata	22.530
	SRR5643514	five period of Gastrodia elata	16.010
	SRR5643515	five period of Gastrodia elata	14.510
	SRR5643524	five period of Gastrodia elata	16.030
	SRR5643525	five period of Gastrodia elata	38.550
	SRR5643528	five period of Gastrodia elata	16.760
	SRR5643658	five period of Gastrodia elata	44.000
	SRR5643659	five period of Gastrodia elata	20.040
	SRR5643660	five period of Gastrodia elata	16.630
	SRR5643661	five period of Gastrodia elata	26.800
	SRR5643662	five period of Gastrodia elata	18.320
	SRR5643663	five period of Gastrodia elata	15.890
	SRR5643664	five period of Gastrodia elata	22.660
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	24.860
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.970
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.380
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	43.350
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	73.730
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	56.780
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	36.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	54.750
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.570
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.460
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.560
SRP279888	Gastro	Gastrodia elata tuber	16.05
	Juven	Juvenile tuber	23.02
	Mother_Gastro	Mother tuber of Gastrodia elata	17.77
	Mother_Juven	Mother tuber of Juvenile	18.43