Detail information of GWHGAAEX010930/evm.TU.scaffold_33.123
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|46446975|ref|YP_008340.1| | 3.00E-37 | hypothetical protein pc1341 [Candidatus Protochlamydia amoebophila UWE25] |
| KOG | KOG4308 | 0 | LRR-containing protein |
| nr | gi|672140022|ref|XP_008793815.1| | 0 | PREDICTED: protein NLRC3-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9M651|RAGP2_ARATH | 3.00E-12 | RAN GTPase-activating protein 2 |
| trEMBL | tr|M0U473|M0U473_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P28160_001} |
| TAIR | AT1G10510 | 0 | RNI-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000044 | 3297539 | 3350912 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010930
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13516.5 | LRR_6 | 222 | 241 | 0.00047 |
| PF13516.5 | LRR_6 | 276 | 297 | 0.0074 |
| PF13516.5 | LRR_6 | 309 | 325 | 0.6 |
| PF13516.5 | LRR_6 | 339 | 355 | 0.14 |
| PF13516.5 | LRR_6 | 360 | 382 | 0.76 |
| PF13516.5 | LRR_6 | 391 | 411 | 0.0014 |
| PF13516.5 | LRR_6 | 419 | 438 | 0.053 |
| PF13516.5 | LRR_6 | 445 | 467 | 0.0015 |
| PF13516.5 | LRR_6 | 477 | 496 | 0.00039 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.050 |
| SRR2545915 | Juvenile tuber | 11.700 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.220 |
| SRR5643514 | five period of Gastrodia elata | 11.470 | |
| SRR5643515 | five period of Gastrodia elata | 9.940 | |
| SRR5643524 | five period of Gastrodia elata | 9.750 | |
| SRR5643525 | five period of Gastrodia elata | 4.970 | |
| SRR5643528 | five period of Gastrodia elata | 2.950 | |
| SRR5643658 | five period of Gastrodia elata | 3.390 | |
| SRR5643659 | five period of Gastrodia elata | 8.840 | |
| SRR5643660 | five period of Gastrodia elata | 9.490 | |
| SRR5643661 | five period of Gastrodia elata | 9.170 | |
| SRR5643662 | five period of Gastrodia elata | 9.440 | |
| SRR5643663 | five period of Gastrodia elata | 10.580 | |
| SRR5643664 | five period of Gastrodia elata | 10.240 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.880 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.350 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.560 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.870 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.120 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.240 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.240 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.00 |
| Juven | Juvenile tuber | 9.36 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.33 | |
| Mother_Juven | Mother tuber of Juvenile | 4.57 |