Gene detail

Detail information of GWHGAAEX010934/evm.TU.scaffold_33.128

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1634	2.00E-33	Predicted transcription factor DATF1, contains PHD and TFS2M domains
nr	gi\|672173833\|ref\|XP_008807055.1\|	3.57E-83	PREDICTED: uncharacterized protein LOC103719542 isoform X1 [Phoenix dactylifera]
trEMBL	tr\|A0A061GNW5\|A0A061GNW5_THECC	8.00E-69	SPOC domain / Transcription elongation factor S-II protein, putative isoform 1 {ECO:0000313\|EMBL:EOY31176.1}
TAIR	AT5G11430	2.00E-33	SPOC domain / Transcription elongation factor S-II protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000044	3432505	3468922	-

Transcript Sequence
>GWHTAAEX010934 CGCCGACGCCCTGCAAAAAATCCCTAAATCCACCTACCTACTCTTCGATTTGGCCTTTTGATCGAGCTTCTTCTATTCGTCCATTGACCTCTTCTCTGTGGCAGCGGCTACGATTAATCTTTCAAGAACCTTTTCATCGGCGATTTAGCCGTGGGTAAAGATTAACTTTCTTGTCACCTTCATCTCCCACGGCGTCGATAATCCACCGCCTACCATCGTTTGATAAGGATTATCTTTCAAGAAGAGATGCTGAATAATAAAGAAAGAAACTTGCTTTTCCCTGATCAAAGAGTGAATTTTATTTCCTCTGGTCCTGGTGCACCTTTCTTACAGAAGGCTGATTTCACACCTTCCAGTTATTTTTCTGACATAAATATACTTGAAGAGGCATCATTGAAAAGAAAATTTATGAACCTGGATACTAAAAACTGCCCGGGCGTTTCCTCAGTATTTGGTGGAAATAGTCAGTATTACAGGGATAATTTTGCTGTAGGAAGGCGTGAAGGGCTTGAAAATTTCAATAAATTGGTTTTTTCTAATGTAAAGCAAGCTAACTTTCAACAGGAAGCTTCCTTTTTTAATGGAATTTTCAAGGATGGAATTTCTAACTTGCGAGATACCGAGCACACAAGATGTACAGGACAGCCAGAACAGAGTGAACGCCATTCAGAATATAGTTGTGGTCACTTTAACACTCTTTTGCAGTGTGACACGGTCAATTCTCATTTACCATTAGTTTTAGAATCATCTAGTTATGAGGAAGTTTGCTTAGAAATGGAGAAGCTGAAGAACAATGTTTATACTTCAAAGGAACTTAAGAGCATAATTTTGGGTAAACAAGATACACCCGTTGTTGTGCAGCAAAGTCAGCCTTTTACTGGGAGAAATTTAAGCGTAAATGCTAGCTTAAATAGTGAAATACTCACTGAGATTGGCGATAGATTCTCTGCTTATGGGGATGATCAGGACAACTCTAAAAATAATAGAGTATCTCCTATAAGATCTGAAAAAATATGGGATGGATCACTTAAGCTAAATGCTTCCACAACTGTGCCTGCAGTTGCTTTCTTCAAGAGTGGTGAGAAAGCTCAATCTATTAACTGGCCTGAGCATGTAGAAATTAAAGGAAAAGTAAGGTTGCACGCATTTGAAAAATTTATTCAGGAGCTTCCTCGTTCTCGGAACCGAGCATTGATGGTGATATCCCTTTGTTGGAAGGCAGGGTCTAGCAAAAGTAGTCTTGCAGGCATGATGGAGATTGCAAAGGGCTATAAGGAATCCAAGAAGGTTGGGTTTGCACAAATACCTCCTGGCATCGATATATATATATGCCCCCGCAGTGACCTCATAATAACTATACTTGCCAAGTACGGCTTTTTCAAGGGAATGGCAGCAGTTGAAGAAGATCAGGATTCTTTCATTGGCTGTGTTGTGTGGCGCAGAAACCAAACATCAACAAACTCTGAATCTAGAGCCACTGAGGGGAAGAAAATTCTATCACAGGAAAAGCAGCCCCTTGATTCAACTCGACTTTCAGTTGAAGGAGTGAACTCACCAGCCATGGAAGCACACGAATCGGAAACTAAAGCAGTTACGCCAATAGAAACAGAACTGAAACCATCTCTGAACGTTCCCGATTCTAAGGCTGGCACCGCCATTTCTCCTTCCTCTGGTACAGGATCTATGATTACTGAGAACAAAACCACGCTTTCCAGCAACAACAACAATTCACACTCTGGCAATAGTTCTGCCCAATTAGTGGCATCCTCAGTTCCATACAGCTTCCCGCTGGTTTCAGCACAGCAGAAAGTTTCAGATTGGCCTTCTTTGAACTTGTTTCAACAGAGTATGAAGCCCGAAGATAGTACTATCCCTCTTTCAGAAAGCTCAGGAGCAGATGAAGCAGTTCTGGTCTCAGACTCACGCACACAAGGGAGCTTTTACTGTGGTTCTGCTTCAGGGCCCAGGCCCCTAATCCCTATAAATCCCTCGAATTTTCATTTTCAGACGCAGCTAGCGCCAAAGATCCCTCCTTTTAATCTTGACCTCTTGCGCAGACTCAACCAGTCAAATAAAAATACACCAAAGGCTGCTGCTAGCGGGATGCTGCAAGGTGAGTTTCATATCAGGCATCAGTTTCAGGGAACTTGTGATGGTTCCAATGATGACGAAAAAGAAGAAGATGATGATGACCTCCCGGAATTCGACTTCAACTCCGCATGCGGAGGGCTAGAAAAACCCATATTCCCGCTGAACGACATACTCCCCATCGGAAATGATTATCAAATTCCGATGTCTTTCAAGCAGCCTTCACCTTTACCTTTTCCCGAGGAGGCTCATTCTGCTGAGGCTTGTCAGTCGATTCGCCGGCCTAATGGTCTGGCTGAGGAAAAGTTCAATCACGGTTTTGAACGCAAGACTCTTTGGGATGACGACGATGATGACATGCCGGAATGGTGCCCACCAGATCTTGAACTTTCCGAGCAGTCTCCGCTCCTTGGAAAAAGGCCTATGTCTCCTTTTGACACTGCGCCGCGGCTACTCCGCTCACGCCAAAGCCATGATTTCTTGCAGCAAAGGTTTCAGCCAGGATTACTGGGGCCATGCCCCACTCCTGATGCCCCGACGGGCCGCCGAATTCAACGTTTGAGTAAGCCTCAAGGGTCAATGCAGGGCCCTCGCCACCGCCGGGATTCCTTCCACCATCGTGCCGGAAAATTCAGCAGGAGGCCGCCTCCTGCTGCTGACCGCAGGCGGCACAGGCGCTGAGATAATTTTATAAACTTGGCTGCCGCTGTTTTTGTACTCACCATGACCGTTGAACTGTTTTTTGTCTTTATGTGTATATTATTGGCAGGAGGAGCTGATGTGTGCTTTCTTCCATAGATATCCTATTGCAGACAGTTTGCCATCGTTTAGGTCTCACTATGTATTTGTATAACCATGCTCAAACGATGTAAGGATTTCACTGGGAAAGAATACTTACTCCCTAGGGGTTGTGGTAATCAGGATTATCGGATTCTTATTTACCCAAATCTTGAAATTCTTAGGTTTGTCAAAATGCTCGTTTTTCACAAACTTGTGTTGGGCTCAATAAAGCGCTTGAGTTTGGTTCGATCAATGAGGAGGCGAGTTGGC

Network for GWHGAAEX010934

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07744.12	SPOC	253	397	6.80E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	26.490
SRP064423	SRR2545915	Juvenile tuber	32.550
SRP108465	SRR5643513	five period of Gastrodia elata	18.030
	SRR5643514	five period of Gastrodia elata	17.960
	SRR5643515	five period of Gastrodia elata	20.810
	SRR5643524	five period of Gastrodia elata	19.300
	SRR5643525	five period of Gastrodia elata	19.070
	SRR5643528	five period of Gastrodia elata	18.780
	SRR5643658	five period of Gastrodia elata	23.330
	SRR5643659	five period of Gastrodia elata	19.710
	SRR5643660	five period of Gastrodia elata	21.540
	SRR5643661	five period of Gastrodia elata	19.540
	SRR5643662	five period of Gastrodia elata	23.720
	SRR5643663	five period of Gastrodia elata	25.060
	SRR5643664	five period of Gastrodia elata	24.820
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	23.660
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	30.310
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.540
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	24.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	24.300
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	28.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	26.810
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	27.150
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	24.220
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.970
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.970
SRP279888	Gastro	Gastrodia elata tuber	16.30
	Juven	Juvenile tuber	11.58
	Mother_Gastro	Mother tuber of Gastrodia elata	23.77
	Mother_Juven	Mother tuber of Juvenile	15.70