Detail information of GWHGAAEX010935/evm.TU.scaffold_33.129


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743873121|ref|XP_010906734.1|4.30E-174PREDICTED: uncharacterized protein LOC105033573 [Elaeis guineensis]
trEMBLtr|A0A061GVQ3|A0A061GVQ3_THECC2.00E-143Telomere-associated protein RIF1, putative {ECO:0000313|EMBL:EOY31164.1}

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004434960403520159+
Transcript Sequence

Network for GWHGAAEX010935

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12231.7Rif1_N573036.60E-36
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11138RIF1 Signaling pathways regulating pluripotency of stem cells map04550

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.710
SRR2545915Juvenile tuber12.630
SRP108465SRR5643513five period of Gastrodia elata2.300
SRR5643514five period of Gastrodia elata2.060
SRR5643515five period of Gastrodia elata2.380
SRR5643524five period of Gastrodia elata1.980
SRR5643525five period of Gastrodia elata2.760
SRR5643528five period of Gastrodia elata2.940
SRR5643658five period of Gastrodia elata3.120
SRR5643659five period of Gastrodia elata3.470
SRR5643660five period of Gastrodia elata3.440
SRR5643661five period of Gastrodia elata4.140
SRR5643662five period of Gastrodia elata3.070
SRR5643663five period of Gastrodia elata3.080
SRR5643664five period of Gastrodia elata2.140
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_18.190
SRR6049655Rhizomagastrodiae_C368-T10_good_14.470
SRR6049656Rhizomagastrodiae_C368-T07_good_110.210
SRR6049657Rhizomagastrodiae_C368-T07_good_18.120
SRR6049658Rhizomagastrodiae_C368-T04_good_116.600
SRR6049659Rhizomagastrodiae_C368-T04_good_118.180
SRR6049660Rhizomagastrodiae_C368-T01_good_111.650
SRR6049661Rhizomagastrodiae_C368-T04_good_115.610
SRR6049662Rhizomagastrodiae_C368-T01_good_110.710
SRR6049663Rhizomagastrodiae_C368-T01_good_113.610
SRR6049664Rhizomagastrodiae_C368-T10_good_17.770
SRR6049665Rhizomagastrodiae_C368-T10_good_17.770
SRP279888GastroGastrodia elata tuber 16.72
JuvenJuvenile tuber2.48
Mother_GastroMother tuber of Gastrodia elata 10.43
Mother_JuvenMother tuber of Juvenile 2.35