Detail information of GWHGAAEX010936/evm.TU.scaffold_33.130
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0251 | 0 | Clathrin assembly protein AP180 and related proteins, contain ENTH domain |
| nr | gi|719981764|ref|XP_010250225.1| | 0 | PREDICTED: putative clathrin assembly protein At5g35200 [Nelumbo nucifera] |
| Swissprot | tr|Q9LHS0|CAP10_ARATH | 0 | Putative clathrin assembly protein At5g35200 |
| trEMBL | tr|M0T132|M0T132_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P23570_001} |
| TAIR | AT5G35200 | 0 | ENTH/ANTH/VHS superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000044 | 3521229 | 3532237 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010936
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07651.15 | ANTH | 34 | 302 | 1.40E-83 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0048268 | Biological Process | clathrin coat assembly |
| GO:0005543 | Molecular Function | phospholipid binding |
| GO:0005545 | Molecular Function | 1-phosphatidylinositol binding |
| GO:0030276 | Molecular Function | clathrin binding |
| GO:0030136 | Cellular Component | clathrin-coated vesicle |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 157.150 |
| SRR2545915 | Juvenile tuber | 186.210 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 151.750 |
| SRR5643514 | five period of Gastrodia elata | 135.130 | |
| SRR5643515 | five period of Gastrodia elata | 215.340 | |
| SRR5643524 | five period of Gastrodia elata | 171.800 | |
| SRR5643525 | five period of Gastrodia elata | 228.640 | |
| SRR5643528 | five period of Gastrodia elata | 349.210 | |
| SRR5643658 | five period of Gastrodia elata | 230.490 | |
| SRR5643659 | five period of Gastrodia elata | 213.310 | |
| SRR5643660 | five period of Gastrodia elata | 216.040 | |
| SRR5643661 | five period of Gastrodia elata | 204.150 | |
| SRR5643662 | five period of Gastrodia elata | 215.080 | |
| SRR5643663 | five period of Gastrodia elata | 203.060 | |
| SRR5643664 | five period of Gastrodia elata | 204.120 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 185.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 187.590 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 172.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 235.250 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 239.910 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 290.490 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 217.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 214.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 140.700 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 188.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 139.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 139.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 210.87 |
| Juven | Juvenile tuber | 242.81 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 504.10 | |
| Mother_Juven | Mother tuber of Juvenile | 580.52 |