Detail information of GWHGAAEX010942/evm.TU.scaffold_33.136


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|514719520|ref|XP_004954253.1|0PREDICTED: heparanase-like protein 3-like [Setaria italica]
Swissprottr|Q9FZP1|HPSE3_ARATH0Heparanase-like protein 3 (Precursor)
trEMBLtr|K3YRG1|K3YRG1_SETIT0Uncharacterized protein {ECO:0000313|EnsemblPlants:Si016855m}
TAIRAT5G349400glucuronidase 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004436760813681248+
Transcript Sequence

Network for GWHGAAEX010942

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03662.13Glyco_hydro_79n273448.20E-151
Protein Sequence

Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH79

KEGG pathway

KO Enzyme pathway mapID
K07964HPSE Metabolic pathways map01100
Glycosaminoglycan degradationmap00531

Gene Ontology

GO term OntologyName
GO:0016798Molecular Functionhydrolase activity, acting on glycosyl bonds
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.770
SRR2545915Juvenile tuber3.750
SRP108465SRR5643513five period of Gastrodia elata24.080
SRR5643514five period of Gastrodia elata19.630
SRR5643515five period of Gastrodia elata9.260
SRR5643524five period of Gastrodia elata13.190
SRR5643525five period of Gastrodia elata0.680
SRR5643528five period of Gastrodia elata0.500
SRR5643658five period of Gastrodia elata0.660
SRR5643659five period of Gastrodia elata0.240
SRR5643660five period of Gastrodia elata0.040
SRR5643661five period of Gastrodia elata0.080
SRR5643662five period of Gastrodia elata0.040
SRR5643663five period of Gastrodia elata0.030
SRR5643664five period of Gastrodia elata0.100
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.800
SRR6049655Rhizomagastrodiae_C368-T10_good_124.770
SRR6049656Rhizomagastrodiae_C368-T07_good_155.100
SRR6049657Rhizomagastrodiae_C368-T07_good_116.110
SRR6049658Rhizomagastrodiae_C368-T04_good_125.430
SRR6049659Rhizomagastrodiae_C368-T04_good_118.090
SRR6049660Rhizomagastrodiae_C368-T01_good_122.250
SRR6049661Rhizomagastrodiae_C368-T04_good_119.570
SRR6049662Rhizomagastrodiae_C368-T01_good_133.920
SRR6049663Rhizomagastrodiae_C368-T01_good_127.600
SRR6049664Rhizomagastrodiae_C368-T10_good_168.940
SRR6049665Rhizomagastrodiae_C368-T10_good_168.940
SRP279888GastroGastrodia elata tuber 0.09
JuvenJuvenile tuber0.88
Mother_GastroMother tuber of Gastrodia elata 0.52
Mother_JuvenMother tuber of Juvenile 0.28