Detail information of GWHGAAEX010949/evm.TU.scaffold_33.146
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|15806701|ref|NP_295421.1| | 4.00E-77 | tRNA-dihydrouridine synthase A [Deinococcus radiodurans R1] |
| KOG | KOG2335 | 0 | tRNA-dihydrouridine synthase |
| nr | gi|672145181|ref|XP_008796500.1| | 0 | PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1 [Phoenix dactylifera] |
| trEMBL | tr|K3Y7H3|K3Y7H3_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si010164m} |
| TAIR | AT5G47970 | 0 | Aldolase-type TIM barrel family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000044 | 3910703 | 3956285 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010949
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01207.16 | Dus | 94 | 407 | 3.00E-57 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008033 | Biological Process | tRNA processing |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0017150 | Molecular Function | tRNA dihydrouridine synthase activity |
| GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.430 |
| SRR2545915 | Juvenile tuber | 4.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.910 |
| SRR5643514 | five period of Gastrodia elata | 9.670 | |
| SRR5643515 | five period of Gastrodia elata | 9.310 | |
| SRR5643524 | five period of Gastrodia elata | 9.630 | |
| SRR5643525 | five period of Gastrodia elata | 10.620 | |
| SRR5643528 | five period of Gastrodia elata | 13.660 | |
| SRR5643658 | five period of Gastrodia elata | 11.670 | |
| SRR5643659 | five period of Gastrodia elata | 5.220 | |
| SRR5643660 | five period of Gastrodia elata | 4.870 | |
| SRR5643661 | five period of Gastrodia elata | 5.150 | |
| SRR5643662 | five period of Gastrodia elata | 4.120 | |
| SRR5643663 | five period of Gastrodia elata | 4.740 | |
| SRR5643664 | five period of Gastrodia elata | 4.070 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.150 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.730 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.890 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.820 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.080 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.900 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.950 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.950 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.89 |
| Juven | Juvenile tuber | 3.85 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.38 | |
| Mother_Juven | Mother tuber of Juvenile | 5.24 |