Detail information of GWHGAAEX010951/evm.TU.scaffold_33.148
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0446 | 0 | Vacuolar sorting protein VPS1, dynamin, and related proteins |
| nr | gi|743808032|ref|XP_010928239.1| | 0 | PREDICTED: dynamin-2A-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9LQ55|DRP2B_ARATH | 0 | Dynamin-2B |
| trEMBL | tr|M0S0Z3|M0S0Z3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P18350_001} |
| TAIR | AT1G59610 | 0 | dynamin-like 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000044 | 3984208 | 4024533 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010951
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00350.22 | Dynamin_N | 40 | 204 | 4.70E-31 |
| PF01031.19 | Dynamin_M | 258 | 495 | 7.90E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01528 | DNM1_3 | Phospholipase D signaling pathway | map04072 |
| Endocytosis | map04144 | ||
| Endocrine and other factor-regulated calcium reabsorption | map04961 | ||
| Synaptic vesicle cycle | map04721 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005525 | Molecular Function | GTP binding |
| GO:0003924 | Molecular Function | GTPase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.820 |
| SRR2545915 | Juvenile tuber | 9.920 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.470 |
| SRR5643514 | five period of Gastrodia elata | 10.550 | |
| SRR5643515 | five period of Gastrodia elata | 8.410 | |
| SRR5643524 | five period of Gastrodia elata | 8.600 | |
| SRR5643525 | five period of Gastrodia elata | 9.670 | |
| SRR5643528 | five period of Gastrodia elata | 7.130 | |
| SRR5643658 | five period of Gastrodia elata | 12.560 | |
| SRR5643659 | five period of Gastrodia elata | 10.040 | |
| SRR5643660 | five period of Gastrodia elata | 10.350 | |
| SRR5643661 | five period of Gastrodia elata | 8.820 | |
| SRR5643662 | five period of Gastrodia elata | 9.000 | |
| SRR5643663 | five period of Gastrodia elata | 9.360 | |
| SRR5643664 | five period of Gastrodia elata | 9.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.730 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.330 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.040 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.750 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.980 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.670 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.800 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.720 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.030 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.030 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.50 |
| Juven | Juvenile tuber | 10.54 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.26 | |
| Mother_Juven | Mother tuber of Juvenile | 8.64 |