Gene detail

Detail information of GWHGAAEX010954/evm.TU.scaffold_33.152

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0446	Vacuolar sorting protein VPS1, dynamin, and related proteins
nr	gi\|695004006\|ref\|XP_009388350.1\|	PREDICTED: dynamin-related protein 1E [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9FNX5\|DRP1E_ARATH	Dynamin-related protein 1E
trEMBL	tr\|M0S912\|M0S912_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P18210_001}
TAIR	AT3G60190	DYNAMIN-like 1E

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000044	4132997	4144864	-

Transcript Sequence
>GWHTAAEX010954 AATTTTTACAATCTTACGTAACACAGAGAATCATAGGAAGTGTTTTGGTACCTCTAATGCCGTATTTCACACTACGGCAGCGACGCATTGTCCCTACGTTGAAACATGGAATATACAATGACGAATGGTGGGGCAGCAAAGCATTATCGTTTATGAAAATTAGAATCAGTGGAGGGCGGGTGCATGCCTGAGGGCGAGTGCGAGCATCTTATCTGAAGCGCTTTGTCCTCTCCCTTCTTTCTTCTTGCTTGTTGGGATCGTCTGTAGGTTAGGGTTCCAAGATGTCGACAATGGAAAGCTTGATCGGTATGGTTAACAAGATCCAGAGAGCGTGCACTGTTCTGGGCGATCATGGCTGCGCTGATAGTGCATTACCGACTCTCTGGGAGGCGCTCCCTTCCGTCGCTGTTGTCGGTGGACAGAGTTCGGGAAAATCGTCTGTCCTTGAGAGCATTGTTGGGCGAGATTTCCTTCCACGTGGATCGGGGATTGTGACAAGGCGGCCTTTGGTGCTTCAACTACACAAGACGGAGGATGGACAGCCGAATTACGCCGAGTTCCTTCATTTGCCTAAGAGGAAATTCAATGATTTTACTCTCGTGCGGAAGGAAATTGCTGATGACACTGATAGATTAACTGGGAGAACTAAACAGATTTCTCCTGTTCCTATTCATCTTAGCATTTACTCCCCCCTTGTTGTCAATTTGACGCTGATTGATCTTCCTGGTTTAACTAAGGTTGCTGTTGAGGGACAGCCTGACAGTATTGTTCAGGAAATTGAAAGCATGGTTCGCTCATATGTTGAGAAGCCCAACTGCATTATTTTGGCAATATCTCCTGCTAATCAAGATATTGCAACATCAGATGCCATTAAACTTGCTAGGGAAGTAGATTCTTCAGGAGAAAGGACATTTGGAGTTCTGACAAAGCTAGATTTGATGGACAGAGGAACAAATGCACTTGATGTTTTAGAAGGAAGATCTTACAGGCTGCAACATCCTTGGGTCGGCATTGTTAATCGATCTCAGGCAGATATAAATAAGAATGTCAACATGATAGTTGCTAGACATAAAGAGAGAGAGTATTTTGCAACTAGTCCTGACTATTCTCATTTGTCCAGTAAAATGGGATCGGAATATCTTGCTAAACTTCTTTCTAAGCATTTGGAGTTAGTAATCAGATCTCGAATTCCAAGCATTTTATCACTGATAAATAAGACTATTGTAGAACTTGACTCAGAGATGGATCATCTCGGTAAACCTATTGCTGTTGATGCTGGGGCACAGTTGTACACTATATTGGAACTCTGCCGTGCTTTTGACAAGATATTCAAAGAGCATCTAGACGGAGGGCGACCAGGTGGGGATCGAATCTTCAGAGTTTTTGATAATCAGCTTCCCACCGCTCTGAAGAAACTTCCATTCGACAAGCATCTCTTGGTGCAGAATGTCAGGAAAGTGGTCTCGGAAGCAGACGGGTATCAGCCCCATCTGATTGCTCCTGAGCAAGGCTATCGTCGGCTTATTGAAGGATCACTCAATTACTTCAGGGGTCCAGCCGAAGCGTCAGTAGATGCGGTTCATTTGGCTTTAAAGGAATTGGTGAGGAAATCTATCGGTGAGACTCAGGAGCTGAAAAAGTTTCCAACTCTCCAATCTGAAATAGCAGCTGCTTCCTATCAATCACTGGAAAGATTCAGGGAAGACAGTAGGAAGACAGTAGCGCGCTTGGTCGACATGGAGGCATCCTACTTGACCGTTGAATTTTTCTGCAGCCTCCCGCAGGAGGCGGAGAAAGGGGGCAATCCGGCTGACTTGAATGCATATCGATATGCCGAAGGGCACTTCCGGAGAATCGCCTCCAATGTTTCCTCTTATATAGGGATGGTGTTGGAAACGTTGAGGCTCTCCATCCCGAAGGCAGTGGTCCATTGCCAAGTGAGGGAAGCCAAGAGATCCCTGCTCAATCTCTTTTATGCTGAACTGGGGAAGAGAAAGGGCAAGCAACTGGGGCAACTCTTGGATGAGGACCCCGCATTGATGCAGCGCAGACTGCAGTGTGCAAAGAGGCTTGAATTGTATAAATCAGCCAGGGGTGAAATTGAAGCCGTTTCTTGGGCTAGATGAGCCACTTATGTTTGTTGTTTGGCATTTGTGACTTCTCTGATATCTATTTGAAACACCAAAAGTATAGATAGCATCATCGCTGCTTGCCTGCCAAGTCTTTTGATCGATTGCGTCTGTGTGCAGAAGCGCAAGTTGAAAATGCATTTTTTTGATTATTGTTGTATGTTTATTAATTTTATTAATAAGCACCTTCTTAAGATTTTTGTAACCAGTATTTGGGATGATGTCTTAAATAAACAGTAGATGCCATATTTGTAAATATATCTAATTTGA

Network for GWHGAAEX010954

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00350.22	Dynamin_N	41	216	7.80E-53
PF01031.19	Dynamin_M	226	492	9.60E-61
PF02212.17	GED	519	610	3.40E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005525	Molecular Function	GTP binding
GO:0003924	Molecular Function	GTPase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.880
SRP064423	SRR2545915	Juvenile tuber	12.720
SRP108465	SRR5643513	five period of Gastrodia elata	22.480
	SRR5643514	five period of Gastrodia elata	34.880
	SRR5643515	five period of Gastrodia elata	24.660
	SRR5643524	five period of Gastrodia elata	27.040
	SRR5643525	five period of Gastrodia elata	17.780
	SRR5643528	five period of Gastrodia elata	12.740
	SRR5643658	five period of Gastrodia elata	16.820
	SRR5643659	five period of Gastrodia elata	14.760
	SRR5643660	five period of Gastrodia elata	13.010
	SRR5643661	five period of Gastrodia elata	12.000
	SRR5643662	five period of Gastrodia elata	14.260
	SRR5643663	five period of Gastrodia elata	14.810
	SRR5643664	five period of Gastrodia elata	15.580
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.900
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	17.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.150
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.700
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.740
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.670
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.210
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.690
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.720
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.720
SRP279888	Gastro	Gastrodia elata tuber	16.75
	Juven	Juvenile tuber	33.82
	Mother_Gastro	Mother tuber of Gastrodia elata	14.07
	Mother_Juven	Mother tuber of Juvenile	20.77