Detail information of GWHGAAEX010958/evm.TU.scaffold_33.158


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08003.00E-42FOG: Predicted E3 ubiquitin ligase
nrgi|720063600|ref|XP_010275692.1|2.85E-48PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Nelumbo nucifera]
Swissprottr|Q9SUS4|RHA1A_ARATH1.00E-23RING-H2 zinc finger protein RHA1a
trEMBLtr|M0RVX6|M0RVX6_MUSAM1.00E-46Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P00680_001}
TAIRAT3G614603.00E-42brassinosteroid-responsive RING-H2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004443698744371363-
Transcript Sequence

Network for GWHGAAEX010958

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_2911355.80E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.820
SRR2545915Juvenile tuber8.570
SRP108465SRR5643513five period of Gastrodia elata24.970
SRR5643514five period of Gastrodia elata19.480
SRR5643515five period of Gastrodia elata34.290
SRR5643524five period of Gastrodia elata30.590
SRR5643525five period of Gastrodia elata53.640
SRR5643528five period of Gastrodia elata45.940
SRR5643658five period of Gastrodia elata24.850
SRR5643659five period of Gastrodia elata33.830
SRR5643660five period of Gastrodia elata13.180
SRR5643661five period of Gastrodia elata17.480
SRR5643662five period of Gastrodia elata16.170
SRR5643663five period of Gastrodia elata7.190
SRR5643664five period of Gastrodia elata35.850
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_131.230
SRR6049655Rhizomagastrodiae_C368-T10_good_154.900
SRR6049656Rhizomagastrodiae_C368-T07_good_139.150
SRR6049657Rhizomagastrodiae_C368-T07_good_127.910
SRR6049658Rhizomagastrodiae_C368-T04_good_127.210
SRR6049659Rhizomagastrodiae_C368-T04_good_131.550
SRR6049660Rhizomagastrodiae_C368-T01_good_186.710
SRR6049661Rhizomagastrodiae_C368-T04_good_133.420
SRR6049662Rhizomagastrodiae_C368-T01_good_142.080
SRR6049663Rhizomagastrodiae_C368-T01_good_198.250
SRR6049664Rhizomagastrodiae_C368-T10_good_141.010
SRR6049665Rhizomagastrodiae_C368-T10_good_141.010
SRP279888GastroGastrodia elata tuber 7.22
JuvenJuvenile tuber8.06
Mother_GastroMother tuber of Gastrodia elata 54.20
Mother_JuvenMother tuber of Juvenile 14.35