Gene detail

Detail information of GWHGAAEX010961/evm.TU.scaffold_33.162

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|74317480\|ref\|YP_315220.1\|	1.00E-32	small-conductance mechanosensitive channel protein [Thiobacillus denitrificans ATCC 25259]
nr	gi\|743777343\|ref\|XP_010919101.1\|	0	PREDICTED: mechanosensitive ion channel protein 1, mitochondrial-like [Elaeis guineensis]
Swissprot	tr\|Q8VZL4\|MSL1_ARATH	1.00E-167	Mechanosensitive ion channel protein 1, mitochondrial (Precursor)
trEMBL	tr\|M0RVX4\|M0RVX4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P00660_001}
TAIR	AT4G00290	4.00E-98	Mechanosensitive ion channel protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000044	4601290	4642891	-

Transcript Sequence
>GWHTAAEX010961 AAATACCTCTGATATTCGTTTGTTACTGTGTGAGCCGTGATTGCGCGCCGTGCTCTCATCTAATGCCCAAAAGCGGAAAAAAAAAAGATCTTCAATCGCCCGTGTCGAACTCGGATGCCCCAAGGAGTGACCGGAAAGAGGCTCGAAGAAAAAAGATCACAATGGAAACAAGGATCCATGTACTTGATCTCACTTTATGGGATTAAAGTTTTCCCAGGAATACAAGGTGTCATTTTACTATAAAGTTGAGCAAAAAGGGCCACAGTTGTGCAGAAATTTGAAGAAAGTTTGAACATGCCAAGAGTTCGAGCAGTTTCACAGTTCTATTTGCATACTGTGAATAAGCATGATTCACAATTCAATGTTTACAGTATGAATATTTCAAAATTCAGGTGGAGTCACTTCAAAGCAGCACCATGTATTAATGAACCTAAGAATTATAAAACAAAACCCTTAACTTTACATCGGATGGTGGATCATACTGCTACTGCAGTGTTACCGGTCTCATTTCATGAGAGCGTACAATGCTGTAATATTTTTTCTATAAATTTTTTTTCTAGATCGTTAAACAGCCATTGTTTGATGAAAAAGGAATTATACCTGCAACATTGCGTTCTCCCATCGGCTCTGCTGTTATCTTTTCGGTCCTACTCATCAAATGCAAGAAGCAAAACAGATGGCCTTCAAAATGTGACTTCAGCTGATTGTTCAACAGAAACAATGGGAAAAACTACTAATTCTATTGGTAATGAGTGGAGTGATATTTTGAATGATGCCCATCAGTCTGTCATGGGTGCTGTTTCTTCTGTCGGAAGAAAGGTGCAGGATGTTTCTGATCAAGTTATTCCTTTCATGCAACAATTATATGCATCACATCCATATCTGGAAAAAGTAATAATTCCTGTTGGTGGCACCATGACAGCAACCTTACTAGCTTGGTTCGTCATGCCTAGAATTTTAAAGAAATTGCACAAGTATGCAAGTCGAAATCCCCTTGCTTTATTATCAGGGAGCCCAATTGAAGAAGAAATCTCTTACGAGAAAAGTTTGTGGGGTGCTTTAGAAGATCCAGCTAGATATCTTATTACTTTCATGGCATTTTATGAGTTAGGTATTATTATTGCGCCAACTACTTCACAATATCTTCCTCAAGCATGGAGGGGTGCAGTTGTTCTTTCTTTTGTGTGGTTTCTCCATAGATGGAAAACTAATGTGTTCACCCGTGCTATGGAAAAGCCAGCTTCTATTGGTCTTGATCGAAACAAGCTCTTGACACTAGAGAAAATTTCTTCTATGGGTCTTCTTGTATTAGGATCAATTGCTCTAGCTGAGGCATGTGGTGTAGCTGTGCAGTCAATTTTAACTGTTGGTGGCATAGGAGGAGTGGCGACGGCATTTGCAGCAAGGGACATACTTGGAAACATACTTAGTGGTCTCTCCTTGCAATTTACAAAGCCATTCTCCCTTGGAGATAATATAAAGGCTGGCTCAATTGAAGGACAAGTGGTAGAAATGGGTTTAACAACCACGTCTCTCATGAATCCTGAAAAGTTTCCTGTCGTTGTTCCAAATTCTTTATTTTCCAGCCAGGTTATTGTGAATAAATCACGTGCGCATTATCGTGCTTGCATGAAGACTATACCTATTCAAATTGATGATATGCAAAAGGTTCCTCATGTAACTATGGAGATAAAATCTATGCTCTGTACTAATCCTAGCGTGTTCTTGGAAAAGGATTCTCCATATTGCTTCCTTTCTCGCATTGAAAATTCTTTCAAAGAGCTTACTCTTGGATACAATCTCAAAATGATGACAAAAGATGAGTCATATGCAACAGAGCAAGACATTCTTCTGCAAGCGGCAGCGATTATTACGAAACATAGTGCTAAAATTGGCTGAACACATCTGATTTGGCAATGACAGTTCAGGCACAAGAGGTGGTTTGAATGCAATGGAATTTGGTTCGAGGTGTCGAACTGTGCCAAATACGATTCTGGTCGCAATTCTTTTCAAGAGACTTCAATTATGAGATTTGAATAGTTTGAATTTTTTGTGTTCTCACTCATAAAAATCCCTGTTTTTTTTTTTATTGGTGTTTCCTCGTCCCTGCTTTGTTTTACTGTGATAGAGGTCTTTTTTGTTTCTATTTAGAATTGTACGCTATATTGTTTTGTCAGAGTAAACTATATTTAATCAATATTTTTTATTATATTTGAGTATATTAAAGTTTT

Network for GWHGAAEX010961

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00924.17	MS_channel	330	532	4.10E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.100
SRP064423	SRR2545915	Juvenile tuber	12.730
SRP108465	SRR5643513	five period of Gastrodia elata	9.310
	SRR5643514	five period of Gastrodia elata	9.000
	SRR5643515	five period of Gastrodia elata	9.910
	SRR5643524	five period of Gastrodia elata	8.920
	SRR5643525	five period of Gastrodia elata	5.730
	SRR5643528	five period of Gastrodia elata	3.510
	SRR5643658	five period of Gastrodia elata	3.440
	SRR5643659	five period of Gastrodia elata	5.850
	SRR5643660	five period of Gastrodia elata	5.900
	SRR5643661	five period of Gastrodia elata	4.020
	SRR5643662	five period of Gastrodia elata	4.030
	SRR5643663	five period of Gastrodia elata	3.870
	SRR5643664	five period of Gastrodia elata	3.720
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.570
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.310
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	17.980
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.480
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.430
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	16.530
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.430
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.680
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.450
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.990
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.990
SRP279888	Gastro	Gastrodia elata tuber	6.27
	Juven	Juvenile tuber	4.87
	Mother_Gastro	Mother tuber of Gastrodia elata	3.61
	Mother_Juven	Mother tuber of Juvenile	3.50