Detail information of GWHGAAEX010984/evm.TU.scaffold_337.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1601 | 2.00E-58 | GATA-4/5/6 transcription factors |
| nr | gi|743766962|ref|XP_010913727.1| | 5.91E-127 | PREDICTED: GATA transcription factor 24-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q8GXL7|GAT24_ARATH | 1.00E-83 | GATA transcription factor 24 |
| trEMBL | tr|M0U045|M0U045_MUSAM | 4.00E-113 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P13870_001} |
| TAIR | AT4G24470 | 2.00E-58 | GATA-type zinc finger protein with TIFY domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000335 | 49736 | 92056 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010984
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF06200.13 | tify | 117 | 148 | 4.10E-13 |
| PF06203.13 | CCT | 176 | 218 | 6.30E-16 |
| PF00320.26 | GATA | 251 | 288 | 8.30E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-GATA |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 24.910 |
| SRR2545915 | Juvenile tuber | 22.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 37.450 |
| SRR5643514 | five period of Gastrodia elata | 41.750 | |
| SRR5643515 | five period of Gastrodia elata | 38.530 | |
| SRR5643524 | five period of Gastrodia elata | 44.180 | |
| SRR5643525 | five period of Gastrodia elata | 44.290 | |
| SRR5643528 | five period of Gastrodia elata | 46.340 | |
| SRR5643658 | five period of Gastrodia elata | 51.650 | |
| SRR5643659 | five period of Gastrodia elata | 28.160 | |
| SRR5643660 | five period of Gastrodia elata | 28.090 | |
| SRR5643661 | five period of Gastrodia elata | 30.650 | |
| SRR5643662 | five period of Gastrodia elata | 30.090 | |
| SRR5643663 | five period of Gastrodia elata | 27.070 | |
| SRR5643664 | five period of Gastrodia elata | 27.330 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.060 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 33.790 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 35.880 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 30.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 28.030 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 32.040 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 28.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 27.430 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 36.770 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 34.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 43.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 43.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 31.21 |
| Juven | Juvenile tuber | 34.75 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 46.68 | |
| Mother_Juven | Mother tuber of Juvenile | 31.18 |