Detail information of GWHGAAEX010985/evm.TU.scaffold_337.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0251 | 0 | Clathrin assembly protein AP180 and related proteins, contain ENTH domain |
| nr | gi|743767181|ref|XP_010913847.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: putative clathrin assembly protein At5g57200 [Elaeis guineensis] |
| Swissprot | tr|Q8VYT2|CAP6_ARATH | 0 | Putative clathrin assembly protein At4g25940 |
| trEMBL | tr|M0TET6|M0TET6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P04960_001} |
| TAIR | AT1G14910 | 0 | ENTH/ANTH/VHS superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000335 | 134773 | 145511 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010985
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07651.15 | ANTH | 29 | 306 | 3.80E-91 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0048268 | Biological Process | clathrin coat assembly |
| GO:0005545 | Molecular Function | 1-phosphatidylinositol binding |
| GO:0005543 | Molecular Function | phospholipid binding |
| GO:0030276 | Molecular Function | clathrin binding |
| GO:0030136 | Cellular Component | clathrin-coated vesicle |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.570 |
| SRR2545915 | Juvenile tuber | 0.830 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.480 |
| SRR5643514 | five period of Gastrodia elata | 1.410 | |
| SRR5643515 | five period of Gastrodia elata | 1.130 | |
| SRR5643524 | five period of Gastrodia elata | 1.010 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.090 | |
| SRR5643658 | five period of Gastrodia elata | 0.030 | |
| SRR5643659 | five period of Gastrodia elata | 0.040 | |
| SRR5643660 | five period of Gastrodia elata | 0.040 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.060 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.350 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.610 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.340 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.180 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.680 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.800 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.410 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.19 |
| Juven | Juvenile tuber | 0.28 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.33 | |
| Mother_Juven | Mother tuber of Juvenile | 0.13 |