Detail information of GWHGAAEX010988/evm.TU.scaffold_3399.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08004.00E-12FOG: Predicted E3 ubiquitin ligase
nrgi|224108589|ref|XP_002314901.1|7.19E-15hypothetical protein POPTR_0010s14330g [Populus trichocarpa]
Swissprottr|Q9ZT50|RHA2A_ARATH1.00E-12E3 ubiquitin-protein ligase RHA2A
trEMBLtr|B9HWQ1|B9HWQ1_POPTR3.00E-15Uncharacterized protein {ECO:0000313|EMBL:EEF01072.1}
TAIRAT1G151004.00E-12RING-H2 finger A2A

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000033912051273-
Transcript Sequence

Network for GWHGAAEX010988

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_219632.20E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms65.560
SRR2545915Juvenile tuber3.180
SRP108465SRR5643513five period of Gastrodia elata183.870
SRR5643514five period of Gastrodia elata6.570
SRR5643515five period of Gastrodia elata15.100
SRR5643524five period of Gastrodia elata8.750
SRR5643525five period of Gastrodia elata31.360
SRR5643528five period of Gastrodia elata3.260
SRR5643658five period of Gastrodia elata4.090
SRR5643659five period of Gastrodia elata0.130
SRR5643660five period of Gastrodia elata0.370
SRR5643661five period of Gastrodia elata0.150
SRR5643662five period of Gastrodia elata0.150
SRR5643663five period of Gastrodia elata0.060
SRR5643664five period of Gastrodia elata0.410
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_128.970
SRR6049655Rhizomagastrodiae_C368-T10_good_133.050
SRR6049656Rhizomagastrodiae_C368-T07_good_137.470
SRR6049657Rhizomagastrodiae_C368-T07_good_1100.570
SRR6049658Rhizomagastrodiae_C368-T04_good_1117.070
SRR6049659Rhizomagastrodiae_C368-T04_good_1154.220
SRR6049660Rhizomagastrodiae_C368-T01_good_159.010
SRR6049661Rhizomagastrodiae_C368-T04_good_1170.460
SRR6049662Rhizomagastrodiae_C368-T01_good_136.630
SRR6049663Rhizomagastrodiae_C368-T01_good_122.620
SRR6049664Rhizomagastrodiae_C368-T10_good_126.180
SRR6049665Rhizomagastrodiae_C368-T10_good_126.180
SRP279888GastroGastrodia elata tuber 1.49
JuvenJuvenile tuber55.90
Mother_GastroMother tuber of Gastrodia elata 43.06
Mother_JuvenMother tuber of Juvenile 16.29