Gene detail

Detail information of GWHGAAEX010991/evm.TU.scaffold_34.4

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4183	2.00E-76	RNA polymerase I 49 kDa subunit
nr	gi\|695078754\|ref\|XP_009386771.1\|	3.56E-119	PREDICTED: uncharacterized protein LOC103973833 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M0U8L2\|M0U8L2_MUSAM	1.00E-119	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP12530_001}
TAIR	AT3G13940	2.00E-76	DNA binding;DNA-directed RNA polymerases

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000037	181484	196144	+

Transcript Sequence
>GWHTAAEX010991 CGGTGAATTTGATACTGGGTTTTAAGAATCCAATTTACCACAAGAGCCCTAGCGGCTCAATCAGCACAGAACGCACCCTTGGATCCCACTTCCCTTCTTCTATCCTCCAATTCTTTTTGTTCTCATCGGTTTCCTGATCTTTAACCTCCAAAACCCTAACTAGCACATCAATTGCAATGGCAGAGGAGGTCACGCCTTCAGTTAGCGGACGAGAAAGGAAAAGGAGGAAGAAGATGAAACTGGAGATGGAAGCCTTTTCGGAGACAGGGGATCGAATGGCTCCCATCGTTGGCTATTTTCCGTCAGGCTACGATCCAGTCGCCGCAGGCGCTAATTCTGACGTTAAGGTATTTAGGAACAAGAATAAGCCCAATCGCCTTGATCTAGTGGTACGTCCGAGCAACTGCAACGTAGAGTTTGTTGGCAAGAGCTATACCGGCGAGGCAGCCATGCCGCAGTTCTCCACTTACGCCCTCGGTGTTCTTGACAAGGAAACTCAGACTCTGAAGATTGTGCCTATTGCTGCAAACAAGATTCTTAGGTTGGAGCCTAGATTTATCAATGGTTTTGGAGAGCCGACAGAAACAGGGGACGAAGCCATTATTAATGAAAAGGAGCAAGCAATGTCAATTTTAAGTACTCGTTATGGAACAAGGAACGCCAAGAAATGGCTAGAAAAAAGGAAATCAATACAGCAAAAAGTCTATGATCTTTCTGCACTCGAGCCACCTAAAGTTGAAACACATGACACGTTCAATGATCAAACTTCAGAAGATGTTAAAGAACCATTGGATCGTAATATCCCACCATATAATCCAACAGCCGTGACACCAGAGGATGCTTATCCATTGCATAAGATTATACCAAAAGGGGAATGGAGGCACCTTCAGGACATCCGTAATATTTTGGAATCGGAACCTGAAGGCCCTCAAAAATTAAAATTTTGGAAGGAGAATCTGTACCCCACTTTTGTTATCCACCGTGTTTATAAACTAAGGGAGATGCAGGATGAAGCGGAGAAGTACCGGTATGCAAGCATATTGTCTTACATCACTCACCTTGTAAACTTCCGGCAGAATGCCGAATCAGCTCGATGGAATCATCATTTCAATTTCAATGAAGCTGGGCCACAAATCGGGGTGCCGCCCGTCGTGTTCGATAGGTTTCTAGCGCTGTTCTTGGATCCGGTCTCAAACTCACTATCTCCCCAGAAGAACGAGCTTCTCATCTGCTACATATTGGTTCTCACCCTCTTTGCTGACAGCTTTTTGACGGATCCGACTGATATTGGGAAGGACTTGGCAATGACTTCGGTTTCGCTCAGGCCTTATTTTCTGCAGTTGGGTTGCAAGAGTCAGAGAGCTGCCCCTTTCAAGAAATCTCGCATGACGCTGCCAGTGCCTTTGGTTTTCAAGGAGTTCAAGAGAAGGGTGGTCAACAAGAAGAGATGAATGACATGCAGAGCATGGGCATGATTCAATCTTCCACAGAGAGGGAAGAGCAGAGAGGGAAAGTGCCTAGCTTCCGAAATTCAACTCATCCAATTTTGTGTGTTTGTGCTTTTGTAGAATCTTTTTGTTCGGCAAATCTTATTAATTTAAAAGGCTTAATTATTTTTTGTTGAATTCAGTTGCTCTAATTTAGAATATTTGGTTATCCTTATTTTTTAATGAGCAGAATATATATATATATATATCTTGTACATGGTAGCCTGTGTATTCGTCTGACTTGGTTCGGGTCTAAATTAGGTCTTTTTTGTGATGTGCTGCAGTGCCCATTATATGGCCCTAATCGCTTTTTGTACGTTGAGG

Network for GWHGAAEX010991

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06870.11	RNA_pol_I_A49	56	418	7.70E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03005	RPA49, POLR1E	RNA polymerase	map03020

Gene Ontology

GO term	Ontology	Name
GO:0006351	Biological Process	transcription, DNA-templated
GO:0003899	Molecular Function	DNA-directed RNA polymerase activity
GO:0003677	Molecular Function	DNA binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	52.470
SRP064423	SRR2545915	Juvenile tuber	54.020
SRP108465	SRR5643513	five period of Gastrodia elata	30.370
	SRR5643514	five period of Gastrodia elata	29.670
	SRR5643515	five period of Gastrodia elata	28.810
	SRR5643524	five period of Gastrodia elata	27.440
	SRR5643525	five period of Gastrodia elata	28.140
	SRR5643528	five period of Gastrodia elata	27.120
	SRR5643658	five period of Gastrodia elata	23.190
	SRR5643659	five period of Gastrodia elata	51.270
	SRR5643660	five period of Gastrodia elata	51.300
	SRR5643661	five period of Gastrodia elata	51.990
	SRR5643662	five period of Gastrodia elata	50.710
	SRR5643663	five period of Gastrodia elata	47.060
	SRR5643664	five period of Gastrodia elata	49.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	41.740
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	57.190
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	34.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	42.600
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.500
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	40.330
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	38.850
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	34.370
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	35.100
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	33.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	33.020
SRP279888	Gastro	Gastrodia elata tuber	47.65
	Juven	Juvenile tuber	60.28
	Mother_Gastro	Mother tuber of Gastrodia elata	34.94
	Mother_Juven	Mother tuber of Juvenile	52.14