Detail information of GWHGAAEX010994/evm.TU.scaffold_34.9
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|284166310|ref|YP_003404589.1| | 3.00E-56 | pectinesterase [Haloterrigena turkmenica DSM 5511] |
| nr | gi|672161340|ref|XP_008800482.1| | 0 | PREDICTED: pectinesterase-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|P83948|PME3_CITSI | 0 | Pectinesterase 3 (Precursor) |
| trEMBL | tr|H6WYP0|H6WYP0_GOSHI | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
| TAIR | AT3G14310 | 0 | pectin methylesterase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000037 | 427780 | 430633 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010994
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04043.14 | PMEI | 36 | 195 | 1.10E-22 |
| PF01095.18 | Pectinesterase | 243 | 539 | 9.50E-146 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01051 | E3.1.1.11 | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 | ||
| Two-component system | map02020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042545 | Biological Process | cell wall modification |
| GO:0004857 | Molecular Function | enzyme inhibitor activity |
| GO:0030599 | Molecular Function | pectinesterase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.480 |
| SRR2545915 | Juvenile tuber | 2.710 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 34.580 |
| SRR5643514 | five period of Gastrodia elata | 16.330 | |
| SRR5643515 | five period of Gastrodia elata | 24.420 | |
| SRR5643524 | five period of Gastrodia elata | 18.960 | |
| SRR5643525 | five period of Gastrodia elata | 2.820 | |
| SRR5643528 | five period of Gastrodia elata | 3.050 | |
| SRR5643658 | five period of Gastrodia elata | 4.990 | |
| SRR5643659 | five period of Gastrodia elata | 41.180 | |
| SRR5643660 | five period of Gastrodia elata | 24.680 | |
| SRR5643661 | five period of Gastrodia elata | 37.130 | |
| SRR5643662 | five period of Gastrodia elata | 49.230 | |
| SRR5643663 | five period of Gastrodia elata | 53.000 | |
| SRR5643664 | five period of Gastrodia elata | 10.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.060 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.940 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.650 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 41.720 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.120 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.940 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.940 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.00 |
| Juven | Juvenile tuber | 16.53 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.05 | |
| Mother_Juven | Mother tuber of Juvenile | 5.02 |