Detail information of GWHGAAEX010995/evm.TU.scaffold_34.10
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|18312075|ref|NP_558742.1| | 5.00E-86 | DNA repair and recombination protein RadA [Pyrobaculum aerophilum str. IM2] |
| KOG | KOG1433 | 0 | DNA repair protein RAD51/RHP55 |
| nr | gi|743840393|ref|XP_010937252.1| | 0 | PREDICTED: DNA repair protein RAD51 homolog [Elaeis guineensis] |
| Swissprot | tr|P94102|RAD51_ARATH | 0 | DNA repair protein RAD51 homolog 1 |
| trEMBL | tr|M5VQK8|M5VQK8_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ03544.1} |
| TAIR | AT5G20850 | 0 | RAS associated with diabetes protein 51 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000037 | 515093 | 532073 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010995
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14520.5 | HHH_5 | 30 | 81 | 3.50E-09 |
| PF08423.10 | Rad51 | 86 | 339 | 1.50E-126 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04482 | RAD51 | Homologous recombination | map03440 |
| Fanconi anemia pathway | map03460 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0006259 | Biological Process | DNA metabolic process |
| GO:0000724 | Biological Process | double-strand break repair via homologous recombination |
| GO:1990426 | Biological Process | mitotic recombination-dependent replication fork processing |
| GO:0003690 | Molecular Function | double-stranded DNA binding |
| GO:0008094 | Molecular Function | DNA-dependent ATPase activity |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0000150 | Molecular Function | recombinase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003697 | Molecular Function | single-stranded DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.470 |
| SRR2545915 | Juvenile tuber | 0.760 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.760 |
| SRR5643514 | five period of Gastrodia elata | 2.000 | |
| SRR5643515 | five period of Gastrodia elata | 1.440 | |
| SRR5643524 | five period of Gastrodia elata | 1.510 | |
| SRR5643525 | five period of Gastrodia elata | 0.410 | |
| SRR5643528 | five period of Gastrodia elata | 0.780 | |
| SRR5643658 | five period of Gastrodia elata | 1.020 | |
| SRR5643659 | five period of Gastrodia elata | 1.550 | |
| SRR5643660 | five period of Gastrodia elata | 1.820 | |
| SRR5643661 | five period of Gastrodia elata | 2.040 | |
| SRR5643662 | five period of Gastrodia elata | 1.320 | |
| SRR5643663 | five period of Gastrodia elata | 1.580 | |
| SRR5643664 | five period of Gastrodia elata | 1.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.410 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.060 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.600 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.900 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.770 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.690 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.870 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.870 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.80 |
| Juven | Juvenile tuber | 1.03 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.66 | |
| Mother_Juven | Mother tuber of Juvenile | 1.58 |