Gene detail

Detail information of GWHGAAEX010998/evm.TU.scaffold_34.15

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|474933791\|ref\|YP_007687373.1\|	9.00E-31	ribose 1,5-bisphosphate isomerase [Thermoplasmatales archaeon BRNA1]
KOG	KOG1466	0	Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3)
nr	gi\|672161328\|ref\|XP_008800475.1\|	0	PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Phoenix dactylifera]
Swissprot	tr\|B9RR88\|MTNA_RICCO	5.00E-14	Methylthioribose-1-phosphate isomerase {ECO:0000255\|HAMAP-Rule:MF_03119}
trEMBL	tr\|M0TR33\|M0TR33_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P16800_001}
TAIR	AT1G72340	0	NagB/RpiA/CoA transferase-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000037	741306	763473	+

Transcript Sequence
>GWHTAAEX010998 TGTGAATCAACAGTACAGTACGCTAAATTTTCTATTCGAACTTTCTTTAATTGCTCTCGACACAAAGAAAGGTGACTTTTTTTAAACCAGATATGTGGAGCACATCGGCTTCTTTTGTCGTGGACAAGTGGCAGCAAGCGCACAGATCTCCTTTTGATCACCAATCGTTCCTCTCCAGCGAAGATATGGAGCCAAACACTCTTCAAAACCCTAATCCCAACTCCAGCCATGGAATTTCTGCATACTACCAGACAAGGTCAGAGCACCACGCCGTCGTCACTAGCGATTGGCTAGCACAGGCACAAGCCGCCGTTATACGAGGTGCGGCGCAGCCTGATGTTTCTACTAATCTTAGGGCTACCGGAGGAAACTGGGCTGCTGGTACTGGGATGCCCTTCAGCGTCATTGACGAGTTCAATTATTGGAGGAAGAAGCCTGACCTGGCAGAGGCCGTTGCGGCGATCATGGCCCTTGCGGCCTTCATCCGTTCCAGCGAGGCTACTACTATGATGGAGCTTGAGATCGAGCTCAAGAAAGCATCCGACATGCTAAAGTCATGGGATGCCACCTCCATATCTCTGTCAGCCAGTTGCGATTTATTCATGCGGTATGTGACGAGAACTTCAGCACTGGAATACGAGGACTTCAATGCAGCCAAACTTCGTTTGATCGAGCGCGGCGAGAAATTTGGAGAAATATCCTTGAAGGCTCGTCGGACTATCGCGATGCTAGCCCAAGATTTCATCTTCGACGGCTCGACAATCCTTGTCCATGGCTTCTCCAGAGTGGTGCTGGAAGTCCTCAAGCTGGCTGCATCAAATCGAAAGATGTTCCGGGTGTTGTGCACAGAGGGAAGGCCGGACAGGACTGGCCTGCGGTTTTCAAATGAGGTCGCTCAACTGGGCGTTCCGGCGAAGCTGCTGATTGATTCGGCTGCAGCATACGCAATGGATGAGATTGACATGGTACTGGTGGGGGCGGACGGGGTGGTGGAAAGCGGAGGGATAATCAACATGATTGGTACTTATCAAATTGCGCTGGTGGCTCATTCGATGAACAAGCCTGTTTATGTGGCTGCGGAGAGCTACAAGTTTACCCGGTTGTACCCGCTGGACCAGAAGGACTTGGCGCCCGCCATCCGCCCCATAGATTTCGGGGTTCCCATCCCTTGCGGCGTCGAGGTCGAGAGGAGCGCCAGGGACTACACGCCGCCTCAGTGCCTCACGCTTCTCTTCACCGATCTTGGCGTCCTCACTCCCTCTGTTGTCAGCGATGAGCTCATCCAGTTGTACCTCTGATGAATTGCCGTCAGGAATCTTAATTTGGAGACTTGGATACTCAGTGTTGTTTACACTGGCCAATTGAACCTCAATCTGATGAACAGCCAGCAGGAGTCCTAATTTGGAGGCTTGGTTACTTAGTGTTGTTACAACGGGACGAACTTTGTTTCCCAAAGTACTCTGCAGAAAGTGCAAACCTTACATTTGTTTTTAATTTATCGTTGCCCATATGTACTGTTTGCAGCAACAAGGCACCAAGCCAATGTCCTAATACTACATAGTATGAAGCGATCAGCATGAACTCCATTAACAAAAACAAAATTGAAGATATATTAGCAAGTGGAGAGTGTTGTTAGGGTTACATGAAACAAAGCTCCATTCCTTCTCAATCAAGCTATAAAGGGAAAATACAACCAAACAGGTTACTAGCTTGCAATTCCTGCAAGTTATTTGAAGGAATAAAAATCTTGCTTGTGAGTTTTTCAATGCACCAATAAATGATTTATTTATCAAAATACTTCATTCTCTTGGAAAATATTTAAACAGTCTTTGACTTTTTAAAATATATTTTTAATTCTTTGAGTTTTGCTTTGGGTAAAA

Network for GWHGAAEX010998

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01008.16	IF-2B	116	389	3.50E-65

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03239	EIF2B1	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0044237	Biological Process	cellular metabolic process

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.530
SRP064423	SRR2545915	Juvenile tuber	34.660
SRP108465	SRR5643513	five period of Gastrodia elata	52.420
	SRR5643514	five period of Gastrodia elata	50.500
	SRR5643515	five period of Gastrodia elata	47.930
	SRR5643524	five period of Gastrodia elata	48.010
	SRR5643525	five period of Gastrodia elata	70.920
	SRR5643528	five period of Gastrodia elata	69.270
	SRR5643658	five period of Gastrodia elata	76.430
	SRR5643659	five period of Gastrodia elata	55.740
	SRR5643660	five period of Gastrodia elata	56.610
	SRR5643661	five period of Gastrodia elata	52.010
	SRR5643662	five period of Gastrodia elata	56.660
	SRR5643663	five period of Gastrodia elata	57.920
	SRR5643664	five period of Gastrodia elata	64.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	50.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	55.630
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	48.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	53.090
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	49.440
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	50.010
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	46.780
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	42.550
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	50.570
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	52.160
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	56.190
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	56.190
SRP279888	Gastro	Gastrodia elata tuber	55.71
	Juven	Juvenile tuber	65.02
	Mother_Gastro	Mother tuber of Gastrodia elata	66.79
	Mother_Juven	Mother tuber of Juvenile	47.95