Gene detail

Detail information of GWHGAAEX011002/evm.TU.scaffold_34.22

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743883616\|ref\|XP_010909464.1\|	0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X4 [Elaeis guineensis]
Swissprot	tr\|Q9SZL8\|FRS5_ARATH	5.00E-117	Protein FAR1-RELATED SEQUENCE 5
trEMBL	tr\|J3MM19\|J3MM19_ORYBR	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB07G24510.1}
TAIR	AT4G38180	2.00E-116	FAR1-related sequence 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000037	1103455	1130670	+

Transcript Sequence
>GWHTAAEX011002 ATGCAGAAAAGGAAAATGGCTGATATAACGGAAACTTCTAATGCTGTGATTGGAGAAACTGAGAGTTCTGACTACGTTCCAACTATTAATATGCTGTTTACTAGTGAAAATGATGCATATGATTTCTATGGTACATATGCCGAGAATGTTGGTTTTTTTGTCAGAAGATCAACTCTATGGACAACGTCAAAGAACATTGTAACGAGAAGGACCTTTGTTTGCTCAAGAGAAGGTTTCCGTGAGAAGAAAAAGGGAGCTAAGGAAGTGAAGTCTCCTCGGCCTGAAACAAGGATTGGCTGCCCAGCTTCCATGACAATTAGACTTACACCAAATGGAAAATACCGTGTCACAGAATTTGTACCAAGTCATAACCATCCTCTTGCAACTGCAGTGTCGATTCAGATGTTAAAGGCAAAGAAGCTGAGGAGGAAGGTTCGTGCAGCAAGAGTTGATTTAGTTAATGATTCTGTTAAGACTCCAGAGTTTGATACTGAAGATGAAGCTTATGAGTTCTATAACATGTATGCTGGAAGGATAGGCTTCACAGTTAGGCGAGCAAGCATGACAGTAACTACTGATGATGTTATTACAAGAAGGATGTTTGTGTGCTCTAAAGAAGGTTTTCGAGAAAGGAAGAAAGGTGCTAAAAGGGTAAAGAAGCCTCGTCCCGAAACCAGAACTGGTTGTCCAGCGTGCATGATTATCAGAATAACACCCAGTGGAAAATATCATGTTACAGAATTTGTTACCTACCATAATCATCCGGTCTCTACCCCTTCATCTAATGATATGTTGGTTTCACTAAATACTGAATCAGGTGCTCATGATGCTGAATCAAGCATGACAGATGCCTTAATGATGAACCCAATACCCATTGGTAATTCTGGGAGCATGCAAGCACGAAATACTCAAAATCTTAGTGTGCTTTCTGTTGACAGGATGTCTTGTCTAAGATCCAAATGTATTAAACCTTTGCTCGTTGGTGATGTAGGTGCTACACTTGAGTATCTACAGAAGATGCAAGATGACAACCCATCTTTTTTTTATGCAGTTCAAGCTGACAAGGCAGATAAATTGATTAACTTTTTTTGGGCTGATGCGAAGTCGGTTCTAGATTTTAACTATTTTGGTGATGTTGTTTGCTTTGACACAACTTATAAATATTTTGGTTATGGTAGGCCATTTGCATTATTTATTGGTGTAAATCATCACAAGCAAACTGTTATTTTTGGTTCTGCGTTATTGCATGATAAAACCAAAAGGTCGTACAAGTGGCTGTTTGACACTTTCAAAACTGCAATGTCCGGAAAGCAACCCAAAACAATTTTGACAGATAGGAGTGCACTGATGGCTGAAGCAATAGCTGAGATGTGGCCCGGGACATTTCATCGATATTGCGTGTGGCATATATATCAGAATGCCCTTGAACAGCTAACCCAAGCATTTCATGGTTCAAAAACTTTAGCCAGTGATTTTAGTCGATGTTTATTTGATTATGAAGATGAGGACGAGTTCCTTATAGCATGGAAAACAATGTTAGAAACTTATGATCTTAAAGATAATCAATGGCTGGTCAATCTATTTGAAGAGCGAGGAAAATGGGCCTTGGTTTATGAACGAGATACATTTTATGCTGATATGAAAAGCGTCCAGCTGAAGGATAACTTGTGGGTTGAGCTAAAAAAGTATCTTTCCCCTGAAACAGAGCTTTTATACTTTTATGACTGTTATGAAAGACTAATTGATGAGAGGCGGCTTGCCGAACTTCAAGCTGATGCTTATGCTAATCAAAGTGCTCGAAAATTGCCTGTAATGAGGGTGTTGAGACAAGCTGCTGATGCATATACACCTGCAGCGTTTAAAATGTTTGAAAAAGAATTTGAAATATACCTAGATTGCATGCTATATCGCTGTGGTGAGATTGGAACGATATCAGAATTCAAGGTAACTGTGGATGAAAAATCCAAAGATCATTTTATCAAATTTGATTCTGTAGATGGAAGTATCATTTGCAGTTGTAAAAAGTTTGAGTTTATTGGGATTCCGTGTCATCACATGTTAAAAGTACTCGATTTTAGAAATATCAAAGATTTGCCTGCAGCTTATGTATTAAAAAGATGGAGAAAGGATGCAAAAGTTGGTGCTTTTAGTGGAATCTTTGATTTTCTTTTTGATGGGAACCCCCAAACATCGTTAGCAAAGCGCTACAACTATTTATGCCGCATATTTAGCATTGCTGCTTCTAGAGCTTCAAAAAGTTTTGATACTTGTGCATTTATTGAAAACCAGTCAGATGTGCTTATGGAACAAGTGGAGCAAGTTTTAAGGGTACGAACTCTTGAAATGCCTTCTCTAATTGCTGCACCATGCGATCAGGCCCAAAACTCTGTTAAATCTATTGTACCGGATGGTTTTCAAAATGGCAGAGTCAACCAAGGAAACTTTGTGGGTGCCACTGAAAATGAACGGTGGATCGGCGGCCATCCACCGGCTTTGAAAGCTTTTGAAGCCTTTTCATATGGATCTGATAACAACAGACTAAATGCCAACATTCGGCCAAAGGATCTCTCGGGGAAGGATCACTTGCTTTCGAAGGAGAGAGAGGATTCAGTCGTATGTGGCGAGGCATTGCATGGGGGTTTAGCAATGCATGGGGTCCACACTTCCAAGGACCAAGAAGATGGAACTTCTAATGCCACGATACCTGCTTCGCTTCATAAGAAATTTGTTGCAGTTGAATCTCGTTCGATAAGTCTGACAAAGTTGCACTTGCATGAAGAGGTTGGCATCATCATTGTCGGTGAGGAAAACAGTTCACCAGGGAATGGAGTGCGACTGAATGCAGATGGCCCAATAGTGGGGCTTTTGGCGTATGGAACTTAA

Network for GWHGAAEX011002

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03101.14	FAR1	41	128	1.10E-27
PF03101.14	FAR1	170	256	2.60E-26
PF10551.8	MULE	379	473	1.50E-27
PF04434.16	SWIM	647	691	1.50E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	FAR1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	25.540
SRP064423	SRR2545915	Juvenile tuber	18.100
SRP108465	SRR5643513	five period of Gastrodia elata	6.030
	SRR5643514	five period of Gastrodia elata	6.350
	SRR5643515	five period of Gastrodia elata	6.990
	SRR5643524	five period of Gastrodia elata	6.550
	SRR5643525	five period of Gastrodia elata	6.560
	SRR5643528	five period of Gastrodia elata	4.800
	SRR5643658	five period of Gastrodia elata	5.030
	SRR5643659	five period of Gastrodia elata	9.660
	SRR5643660	five period of Gastrodia elata	10.190
	SRR5643661	five period of Gastrodia elata	7.500
	SRR5643662	five period of Gastrodia elata	9.130
	SRR5643663	five period of Gastrodia elata	10.700
	SRR5643664	five period of Gastrodia elata	9.030
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.090
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.620
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.060
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.210
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.490
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.910
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.980
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.820
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.820
SRP279888	Gastro	Gastrodia elata tuber	7.45
	Juven	Juvenile tuber	8.20
	Mother_Gastro	Mother tuber of Gastrodia elata	3.55
	Mother_Juven	Mother tuber of Juvenile	6.98