Detail information of GWHGAAEX011004/evm.TU.scaffold_34.25
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|158522375|ref|YP_001530245.1| | 2.00E-09 | CaCA family Na(+)/Ca(+) antiporter [Desulfococcus oleovorans Hxd3] |
| KOG | KOG2399 | 0 | K+-dependent Na+:Ca2+ antiporter |
| nr | gi|695066289|ref|XP_009380030.1| | 0 | PREDICTED: cation/calcium exchanger 4-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SYG9|CCX4_ARATH | 0 | Cation/calcium exchanger 4 |
| trEMBL | tr|Q8GS69|Q8GS69_ORYSJ | 0 | Putative potassium-dependent sodium-calcium exchanger-like protein {ECO:0000313|EMBL:AAO13475.1} |
| TAIR | AT1G54110_2 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000037 | 1244090 | 1246941 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011004
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module13 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01699.23 | Na_Ca_ex | 60 | 202 | 2.00E-24 |
| PF01699.23 | Na_Ca_ex | 401 | 552 | 7.40E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 23.900 |
| SRR2545915 | Juvenile tuber | 21.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 31.270 |
| SRR5643514 | five period of Gastrodia elata | 25.490 | |
| SRR5643515 | five period of Gastrodia elata | 40.980 | |
| SRR5643524 | five period of Gastrodia elata | 16.530 | |
| SRR5643525 | five period of Gastrodia elata | 70.260 | |
| SRR5643528 | five period of Gastrodia elata | 29.370 | |
| SRR5643658 | five period of Gastrodia elata | 41.070 | |
| SRR5643659 | five period of Gastrodia elata | 39.680 | |
| SRR5643660 | five period of Gastrodia elata | 26.390 | |
| SRR5643661 | five period of Gastrodia elata | 31.280 | |
| SRR5643662 | five period of Gastrodia elata | 38.880 | |
| SRR5643663 | five period of Gastrodia elata | 38.320 | |
| SRR5643664 | five period of Gastrodia elata | 103.780 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 68.330 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 44.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 58.530 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 61.720 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 45.720 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 54.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 79.910 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 57.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 33.800 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 70.530 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 50.220 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 50.220 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 37.04 |
| Juven | Juvenile tuber | 8.69 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.64 | |
| Mother_Juven | Mother tuber of Juvenile | 8.78 |