Gene detail

Detail information of GWHGAAEX011007/evm.TU.scaffold_34.28

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|186681873\|ref\|YP_001865069.1\|	8.00E-28	hypothetical protein Npun_F1419 [Nostoc punctiforme PCC 73102]
KOG	KOG0305	0	Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits
nr	gi\|743775453\|ref\|XP_010918104.1\|	0	PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Elaeis guineensis]
Swissprot	tr\|Q9SZA4\|CDC21_ARATH	0	Cell division cycle 20.1, cofactor of APC complex
trEMBL	tr\|M0RUS7\|M0RUS7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P23470_001}
TAIR	AT4G33270	0	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000037	1314494	1317214	-

Transcript Sequence
>GWHTAAEX011007 GGGAAATTATAAAAGCGGGATCTCCGCTTTCGCAGAAGTTACTTTTTTCTTTCTTAGCGTTTCTCTTCTTCTTCATCGCTTTAACAAAACGAAGAAGAGCTGCGCTTCCGCTTCCGCTTTCGCTTCGGCTTCCGACAATTTTAAAATTTTTATGATCATCTAACCATCTAAACATCATCTGATCTGATTTTTTTTCTTATATTTGTTAATTATAGTGTCCTTCTAACAGAATTTTGATTGCAGGAGATTGTTTTTAGTTTTCAAAATTATTTTTATTATTTTGCCGTACTCTGACAAATGGATGCAGGTTCGTTCTCGTTCTCCCCCGAAAAGATTCTGCAAATATCTCAGAAACCTCTCGATCGAGTTGTTTTCATCCCTTCCCTGCGCAACACTTGCTCGAATTCATGGGCTTCCTGGAATAGCGGAGATAGATTCATACCGGATAGATCTGCAATTGATTTTGATGTTGCACGGTACTTGTTATCTCAGCCTAACAAGAAGGAAGAGGAGAATCCTGAAATCGTTTCGCCTGCGAAAGTGGCGTATCGTAAATTGCTGGAGGAGACTCTTCTGAATAACAGAACCCGAATCATGTCGTTCAGCAGAAAGCCACCGATTTCTGCAGATTCAATGCTGTCTGCAATGGCCGAAAATTCCTCTTCTGGGACAACCAAGGCTACTAATAAGAAGAAGAAGAGGAGATTCATTTCGCAGAAAGCGGAGAGGATATTAGATGCCCCAGATTTGGCGGATGACTTTTATCTGAATCTGCTGGATTGGGGAAGCAGAAATGTCTTGTCCATTGCTCTCGGAAACACGGTTTATCTGTGGAATGCTTCGAATAGTTCTGTATCTACGCTTATGAGTGCTGAGGATGAAATTGGCCGAATCACCAGCGTCAGTTGGGCAGCTGATGGGCACCATCTTGCTGTTGGGTTGGAAAACTCCGATGTTCAGCTGTGGGACTCAACCTCCGCTAAACTGCTGAGAACGCTGAAAGGAATCCATGGATCTCGCGTGGGAGCTCTTGCTTGGAACAACTGTGTCCTGACAAGCGGCGGAATGGATGGAAAGATTGTGAACAATGATGTGAGGATAAGAAGCCCACAAGTGAAGTCCTTCATGGGTCACAGGGAAGAAGTGTGCGGCCTTAAATGGTGTGCATCCGGCAAGCAGCTAGCCAGCGGTGGAAATGACAATCTGCTCCATATATGGGATTTATCCGCCGCACCTTCTAACCAAAACCAATGGCTGCATCGATTTGAGGATCACAATGCTGCAGTCAAGGCTTTGGCTTGGTGCCCTTTCTCCAATAATCTGCTTGCTTCGGGCGGAGGAGGCAGTGACAGATGCATCAAGTTTTGGAACACTGCTACCGGAGCTTGTTTGAGCTCAGTCGACACTGGCTCGCAGGTCAGCGGACTGCTGTGGAGCAAAAATGAGCGCGAGCTTCTCAGCTCTCATGGCTTCACAGGAAACCATCTCACTCTCTGGAAGTATCCATCTATGCTCAAGCTTACTGAGCTCCACGGCCATACTTCCAGAGTTCTCCATATGGCTCAGAGCCCTAATGGATGCACGGTGGCAACGGCAGCTGGGGATGAGACTTTGAGGTTTTGGAACGTGTTTGGGAATCCGGAGGCGGATAAACCTGCGCGTAAAGCATACTCGGAAGCCTTTGCCAATTTAAGCCGCTTGAGATGACCACAGTTGAGTTGAGCTGAGTTGAGTCGAGGGAAAGAAAATAATTTTATGGGAACATCTCAATTTTGATTCATTTTCTTTATCCTCCCAACACAACGAGATTATGATATTGTGGATGACATTCACGACTTCTAAAGATAAGTTCAATATCATGTTGATTAAATATCTTTTTCATTAGTTTATATTCTTCTGCATATGATTAGCATGATAATACTTTCATAAACTCTTCCAATATTAGTACTTTATCCTCCGATATTTATAGTGCAAGGCCAAAATCTCTAAACATTAAAATCTTTCATGTTAACATGCTAGGTGAGAAATCTTTATTGGGATGGGAAGATGGCCGCCGTCTAGGATTGCACTTGGTTGGAATAGAACAGAGGACGAGTTGCGCATTGATTGATATGTGTTACTTTGAATAATTGATATTTTAAGAATTGCATCAAATTTTTTTTTTTTTGTAAGGTCTGCATGATACACTTTGCATGGATCAAATGCATTAGCAAATTGCAAATATTTGATTTATTTGTATAGAAGATTTTTGAAATTTATATTTTTAGAATGTTAAATACTATAAATTTTATTTTCTTATGAGAAAT

Network for GWHGAAEX011007

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12894.6	ANAPC4_WD40	187	248	2.40E-07
PF00400.31	WD40	273	308	7.00E-05
PF00400.31	WD40	320	358	0.00074
PF00400.31	WD40	408	443	0.00046

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K03363	CDC20	Ubiquitin mediated proteolysis	map04120
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.820
SRP064423	SRR2545915	Juvenile tuber	6.860
SRP108465	SRR5643513	five period of Gastrodia elata	10.050
	SRR5643514	five period of Gastrodia elata	13.380
	SRR5643515	five period of Gastrodia elata	15.070
	SRR5643524	five period of Gastrodia elata	15.420
	SRR5643525	five period of Gastrodia elata	70.310
	SRR5643528	five period of Gastrodia elata	47.360
	SRR5643658	five period of Gastrodia elata	67.040
	SRR5643659	five period of Gastrodia elata	9.860
	SRR5643660	five period of Gastrodia elata	17.270
	SRR5643661	five period of Gastrodia elata	16.320
	SRR5643662	five period of Gastrodia elata	20.300
	SRR5643663	five period of Gastrodia elata	21.660
	SRR5643664	five period of Gastrodia elata	19.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.860
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.190
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.870
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.280
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.660
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.220
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.320
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.040
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.430
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.430
SRP279888	Gastro	Gastrodia elata tuber	17.67
	Juven	Juvenile tuber	15.52
	Mother_Gastro	Mother tuber of Gastrodia elata	66.60
	Mother_Juven	Mother tuber of Juvenile	51.30