Detail information of GWHGAAEX011008/evm.TU.scaffold_34.30


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|389860732|ref|YP_006362972.1|4.00E-51proteasome subunit alpha [Thermogladius cellulolyticus 1633]
KOGKOG01829.00E-16320S proteasome, regulatory subunit alpha type PSMA6/SCL1
nrgi|695066287|ref|XP_009380029.1|3.44E-174PREDICTED: proteasome subunit alpha type-6 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9XG77|PSA6_TOBAC1.00E-169Proteasome subunit alpha type-6
trEMBLtr|M0RJ25|M0RJ25_MUSAM1.00E-174Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}
TAIRAT2G058409.00E-16320S proteasome subunit PAA2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003713788891411140-
Transcript Sequence

Network for GWHGAAEX011008

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10584.8Proteasome_A_N9311.20E-15
PF00227.25Proteasome352201.20E-52
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02730PSMA6 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0051603Biological Processproteolysis involved in cellular protein catabolic process
GO:0004298Molecular Functionthreonine-type endopeptidase activity
GO:0004175Molecular Functionendopeptidase activity
GO:0005839Cellular Componentproteasome core complex
GO:0019773Cellular Componentproteasome core complex, alpha-subunit complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms88.620
SRR2545915Juvenile tuber95.650
SRP108465SRR5643513five period of Gastrodia elata126.890
SRR5643514five period of Gastrodia elata157.290
SRR5643515five period of Gastrodia elata126.020
SRR5643524five period of Gastrodia elata149.900
SRR5643525five period of Gastrodia elata138.830
SRR5643528five period of Gastrodia elata147.510
SRR5643658five period of Gastrodia elata115.280
SRR5643659five period of Gastrodia elata117.030
SRR5643660five period of Gastrodia elata114.440
SRR5643661five period of Gastrodia elata127.170
SRR5643662five period of Gastrodia elata114.140
SRR5643663five period of Gastrodia elata112.250
SRR5643664five period of Gastrodia elata116.390
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1109.970
SRR6049655Rhizomagastrodiae_C368-T10_good_1215.690
SRR6049656Rhizomagastrodiae_C368-T07_good_1134.700
SRR6049657Rhizomagastrodiae_C368-T07_good_1103.900
SRR6049658Rhizomagastrodiae_C368-T04_good_1111.320
SRR6049659Rhizomagastrodiae_C368-T04_good_1108.350
SRR6049660Rhizomagastrodiae_C368-T01_good_1104.980
SRR6049661Rhizomagastrodiae_C368-T04_good_1104.880
SRR6049662Rhizomagastrodiae_C368-T01_good_1149.000
SRR6049663Rhizomagastrodiae_C368-T01_good_1131.650
SRR6049664Rhizomagastrodiae_C368-T10_good_1183.850
SRR6049665Rhizomagastrodiae_C368-T10_good_1183.850
SRP279888GastroGastrodia elata tuber 101.69
JuvenJuvenile tuber130.78
Mother_GastroMother tuber of Gastrodia elata 93.95
Mother_JuvenMother tuber of Juvenile 79.26