Detail information of GWHGAAEX011016/evm.TU.scaffold_34.42


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428200956|ref|YP_007079545.1|1.00E-1753-isopropylmalate dehydrogenase [Pleurocapsa sp. PCC 7327]
KOGKOG078603-isopropylmalate dehydrogenase
nrgi|672160197|ref|XP_008799875.1|0PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like isoform X1 [Phoenix dactylifera]
Swissprottr|P93832|LEU32_ARATH03-isopropylmalate dehydrogenase 2, chloroplastic (Precursor)
trEMBLtr|I1PE00|I1PE00_ORYGL03-isopropylmalate dehydrogenase {ECO:0000256|RuleBase:RU004445}
TAIRAT1G805600isopropylmalate dehydrogenase 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003720894892147858+
Transcript Sequence

Network for GWHGAAEX011016

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00180.19Iso_dh453932.10E-135
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00052leuB, IMDH Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
C5-Branched dibasic acid metabolismmap00660
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0009098Biological Processleucine biosynthetic process
GO:0055114Biological Processoxidation-reduction process
GO:0051287Molecular FunctionNAD binding
GO:0000287Molecular Functionmagnesium ion binding
GO:0003862Molecular Function3-isopropylmalate dehydrogenase activity
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.710
SRR2545915Juvenile tuber27.870
SRP108465SRR5643513five period of Gastrodia elata35.950
SRR5643514five period of Gastrodia elata46.320
SRR5643515five period of Gastrodia elata36.800
SRR5643524five period of Gastrodia elata45.710
SRR5643525five period of Gastrodia elata23.470
SRR5643528five period of Gastrodia elata19.450
SRR5643658five period of Gastrodia elata14.250
SRR5643659five period of Gastrodia elata26.870
SRR5643660five period of Gastrodia elata24.590
SRR5643661five period of Gastrodia elata29.930
SRR5643662five period of Gastrodia elata33.140
SRR5643663five period of Gastrodia elata25.210
SRR5643664five period of Gastrodia elata27.240
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_132.940
SRR6049655Rhizomagastrodiae_C368-T10_good_121.160
SRR6049656Rhizomagastrodiae_C368-T07_good_134.200
SRR6049657Rhizomagastrodiae_C368-T07_good_128.080
SRR6049658Rhizomagastrodiae_C368-T04_good_124.630
SRR6049659Rhizomagastrodiae_C368-T04_good_122.310
SRR6049660Rhizomagastrodiae_C368-T01_good_128.090
SRR6049661Rhizomagastrodiae_C368-T04_good_128.190
SRR6049662Rhizomagastrodiae_C368-T01_good_143.880
SRR6049663Rhizomagastrodiae_C368-T01_good_135.430
SRR6049664Rhizomagastrodiae_C368-T10_good_147.210
SRR6049665Rhizomagastrodiae_C368-T10_good_147.210
SRP279888GastroGastrodia elata tuber 31.40
JuvenJuvenile tuber39.60
Mother_GastroMother tuber of Gastrodia elata 13.84
Mother_JuvenMother tuber of Juvenile 23.40