Detail information of GWHGAAEX011017/evm.TU.scaffold_34.43


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG13750Beta tubulin
nrgi|357448641|ref|XP_003594596.1|0Tubulin beta chain [Medicago truncatula]
Swissprottr|Q40665|TBB3_ORYSJ0Tubulin beta-3 chain
trEMBLtr|G7IML1|G7IML1_MEDTR0Tubulin beta-1 chain {ECO:0000313|EMBL:AES64847.1}
TAIRAT5G122500beta-6 tubulin

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003721532522160034+
Transcript Sequence

Network for GWHGAAEX011017

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00091.24Tubulin32113.20E-70
PF03953.16Tubulin_C2613811.30E-40
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07375TUBB Phagosome map04145
Gap junctionmap04540

Gene Ontology

GO term OntologyName
GO:0007017Biological Processmicrotubule-based process
GO:0005525Molecular FunctionGTP binding
GO:0003924Molecular FunctionGTPase activity
GO:0005200Molecular Functionstructural constituent of cytoskeleton
GO:0005874Cellular Componentmicrotubule

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms579.880
SRR2545915Juvenile tuber973.490
SRP108465SRR5643513five period of Gastrodia elata767.650
SRR5643514five period of Gastrodia elata476.020
SRR5643515five period of Gastrodia elata615.780
SRR5643524five period of Gastrodia elata437.840
SRR5643525five period of Gastrodia elata989.980
SRR5643528five period of Gastrodia elata525.110
SRR5643658five period of Gastrodia elata682.480
SRR5643659five period of Gastrodia elata1470.970
SRR5643660five period of Gastrodia elata1504.210
SRR5643661five period of Gastrodia elata1355.670
SRR5643662five period of Gastrodia elata1718.430
SRR5643663five period of Gastrodia elata1672.380
SRR5643664five period of Gastrodia elata2056.860
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1806.200
SRR6049655Rhizomagastrodiae_C368-T10_good_1476.700
SRR6049656Rhizomagastrodiae_C368-T07_good_1648.630
SRR6049657Rhizomagastrodiae_C368-T07_good_1962.240
SRR6049658Rhizomagastrodiae_C368-T04_good_1856.920
SRR6049659Rhizomagastrodiae_C368-T04_good_1959.110
SRR6049660Rhizomagastrodiae_C368-T01_good_1786.120
SRR6049661Rhizomagastrodiae_C368-T04_good_1841.250
SRR6049662Rhizomagastrodiae_C368-T01_good_1542.530
SRR6049663Rhizomagastrodiae_C368-T01_good_1588.580
SRR6049664Rhizomagastrodiae_C368-T10_good_1500.580
SRR6049665Rhizomagastrodiae_C368-T10_good_1500.580
SRP279888GastroGastrodia elata tuber 1,724.60
JuvenJuvenile tuber1,994.21
Mother_GastroMother tuber of Gastrodia elata 601.30
Mother_JuvenMother tuber of Juvenile 1,089.28