Detail information of GWHGAAEX011019/evm.TU.scaffold_34.46
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|292493898|ref|YP_003529337.1| | 0 | sucrose synthase [Nitrosococcus halophilus Nc 4] |
| KOG | KOG0853 | 0 | Glycosyltransferase |
| nr | gi|327421850|gb|AEA76429.1| | 0 | sucrose synthase 1 [Oncidium hybrid cultivar] |
| Swissprot | tr|Q41607|SUS2_TULGE | 0 | Sucrose synthase 2 |
| trEMBL | tr|F5BYH1|F5BYH1_ONCHC | 0 | Sucrose synthase 1 {ECO:0000313|EMBL:AEA76429.1} |
| TAIR | AT3G43190 | 0 | sucrose synthase 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000037 | 2396556 | 2402387 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011019
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00862.18 | Sucrose_synth | 66 | 612 | 1.40E-285 |
| PF00534.19 | Glycos_transf_1 | 618 | 797 | 4.20E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT4 |
| Carbohydrate-Active enzymes Family | GT4 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00695 | E2.4.1.13 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Starch and sucrose metabolism | map00500 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005985 | Biological Process | sucrose metabolic process |
| GO:0016157 | Molecular Function | sucrose synthase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 273.050 |
| SRR2545915 | Juvenile tuber | 446.410 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 582.150 |
| SRR5643514 | five period of Gastrodia elata | 533.150 | |
| SRR5643515 | five period of Gastrodia elata | 575.910 | |
| SRR5643524 | five period of Gastrodia elata | 480.270 | |
| SRR5643525 | five period of Gastrodia elata | 784.730 | |
| SRR5643528 | five period of Gastrodia elata | 931.020 | |
| SRR5643658 | five period of Gastrodia elata | 893.980 | |
| SRR5643659 | five period of Gastrodia elata | 237.890 | |
| SRR5643660 | five period of Gastrodia elata | 144.740 | |
| SRR5643661 | five period of Gastrodia elata | 178.200 | |
| SRR5643662 | five period of Gastrodia elata | 620.570 | |
| SRR5643663 | five period of Gastrodia elata | 548.180 | |
| SRR5643664 | five period of Gastrodia elata | 311.940 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1631.870 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 405.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 895.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1129.620 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 633.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 481.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 342.710 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 870.120 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 267.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 237.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 339.060 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 339.060 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 350.05 |
| Juven | Juvenile tuber | 345.98 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 577.56 | |
| Mother_Juven | Mother tuber of Juvenile | 618.39 |