Gene detail

Detail information of GWHGAAEX011023/evm.TU.scaffold_34.54

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2190	0	PolyC-binding proteins alphaCP-1 and related KH domain proteins
nr	gi\|672122066\|ref\|XP_008784353.1\|	0	PREDICTED: KH domain-containing protein At4g18375-like [Phoenix dactylifera]
Swissprot	tr\|P58223\|Y4837_ARATH	3.00E-176	KH domain-containing protein At4g18375
trEMBL	tr\|M0T3W5\|M0T3W5_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P03670_001}
TAIR	AT5G46190	0	RNA-binding KH domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000037	2804951	2819106	-

Transcript Sequence
>GWHTAAEX011023 GTGGGATATATATATATTTTGTTAAAAAAAAGATTAGGGTTTCTTTAAATTGCACTTACATCGCACACTCCATTCTTCGGCTTAGGGTTATCCGCTGAAACGCGAGCTCCACCGGCTGTGACGCAGCTTTTGGGTACCCAGGTTTTATAGAATGGCTGAAATTGGTAAGCGTTATCATCAACGAGATGTTGATAGTTTTGGAAAGAATCAGAAGAGGAGGGTTGGAAATAAGGATAATTTTGTTGATGGGGAATTGGTTTTTTACCGCGTTGTTTGTCCAGATAGGGTGATTGGAAGTGTGATTGGCAAAGGTGGTAAAGTGATCAATTCCTTGAGGCAAGAGACACATTCCAAGATTAAAGTTGTCGATCCCTTTCCAGGTTGTCAGAAGAGGGTTTTAATTGTTTATTGCTATGTGAAAGACAAGAGCCCTGTAGATGTTAATGATAACATTATTGCACCTCTCTGTCCTGCACAAGATGGTTTAATTAGAGTGCATGATGCTATTGTAAATGCTTTGACAAACATTGAGGATGCTGGCGAAAATGACAACGAAGAAGTTGAATTGCTTGTTCCAGCTAGTCAAGCCTCCAACATTATTGGAAAAGCTGGTACCATCATCAAGATGCTTAGAGCAAAAACCAAGGCAAATATCAAGATTAACCCTAAGGATGAAAGTAATATTGATCATTCTTGTGCAATGAGCTTTGATAATTTTCTTCAGATAACTGGTGATGCTGGAGCTGTTAAGAGGGCTCTTCTTGCTGTTTCTTCAATAATGTACAAGTTCCCTCCAAGAGAAGACATTCCACTTGATACAACAATTGAAGAAATTCCGCCTAGCATAATCATCCCTTCTGATGTTCCTATTTACCCACCTAGTAACTTCTACCCCAGCACTGATGCTATTGTTGCTCCGCCAAGATCTGTGATGGGGGCTACAAAACATGTGCCTGAACTTTATGGATATGCTGATGCTGCCAATACATTACCTTTGTACTCATCAACAGTTCTTTCAGGATACAATAGTTCATCACATTCAGAAGAATTAGTTGTCCGAGTCTTATGTTCATCAGATAGGATTGGGCGAGTTATCGGCAAAGGAGGGAGCACAATTAAGACCATACGGAAATCCAGTGAAGCTCGTGTTGAAGTTGATGATACGAAGAAAAAAATTGATGACTGCATTATAACTGTTACTTCCAATGAGTCTACCGATGATGTGAAGTCAGCGGCAGTTGAAGCTGTATTATTAATTCAGGAAAAGATGCATGATGAAGATGATGAAACAGTGAGCATTCGCCTTCTTGTTCCTACAAAAGTGATTGGCTGCCTAATAGGTAAGAGCGGCTCAATTATAAATGAAATGCGCAAGAAGACCAAGGCTGATATTCGCATCTCAAAGGGTGAAAAGCAGAAATCTACTCCTGATGATGAACACGTGGAGGTATCTGGGGAGGCAAGTAGGGTTAGAGATGCACTCCTTCAGATTATACTCAGGCTCAGGGATGATGCTTTGAAAGATAAGGACGGGGGTAATGCAGCTCCTCTTACTGATTCTCTTTACACTGGAAATTTGTCTGTGCCTTCTTTGTTGCCCAGTGTTCAAACTGCCAGTAATTTAAGTTATGATCGGAGAACTGAATATGGAAGTGGATTGGGGTTGCTTTCTGGCAGCAGCCTTTATGGATACAGCTCGTTACAGCCTGGTGAGAGTGCATATGGTGGCCTTTCATCATACTCATCCAAGTCTTATGAAAGAGTGCCTTCTTATGTTGAAATGACCATTCCCTCACATGCAATTAGCAAAGTTTTGGGAAGAGGTGGATCGAATCTTGCTAACATTCGGAAGATTTCTGGAGCAGATATTGAAATTGTTGATTCAAAATCATCACGTTATGATCGTGTTGCTCAGATTTCAGGGACTGCAGAAGAGAAACGTACTGCAGAGAACTTGATCCAGGCTTTTATCATGTCGACCTGATCATCCTTATCCTGTCTTTAGATGCAGAAATTTATCTTTTCTAAGGTGGTCATCAAATCTACCCTCCTCGGTCTCTCTGATGAGTAGGAAAATTATAGATCCTTTAACGTTTGCTTTTCCTATCAAAAAAAAGGTCAAGAACGTTCTAAGAAGCTAGGAAAATTCTTTTTTGTCAATGCTTTTTCAGGATATCTTAGAAGTGTAAGGCTCTTTTCTATCACTTTCAAGTTATTATGACTGTTATACCAGAAGTCACTGTTCTCTGTCCGTGTGTTCTCTTTAGGAGATTTTTATCTTGTCTGCTATCTTCTTTCCCAGCTTATTATGTTTCAAATCTTCTGTATCCTTTCACTGTATGACTGAGCTGTGCTGCACTTCTTCATGAGAAAATGATATTTTTTCGTGAGCTCATGCCTTTATTATCCAGTGTCAGGATTTTTCAAGACATCTTTTACTATTGAAACGTGAAATGTTGTGCCAAATTTTTTCTTGTCGATGGAGCCATCTCATGATTGAAATCTTCATATTGACGAACCATTGCAACATCCATGCTAATTTCTTCTGTACATATTTTATATTTTCAGGATTTTAACCCTGTTTTTCAAAAAAAGTCTTCAAAAAATATAGTATGATGTTTGTTCGTTGGTTTATGCAATTGGAATGATCTCTTTGTTTTCTGATCTTTCTTTCCCCAAGTTTCTAATGAACAAATAATTTGGAACCCACTTAACCTCTTATCATTTTACTGACAACTGAACTCTGCTGAGGGTTTCTTAATTTATTTTGTTCAGGAGCTCACATTTCTTTTATTAAATACACTGCTATATCAGGTTATATGGATGCCATCTATTGATATCATTCTAGTATTTATAGCTTGGTGATAATCCCAATTGCTTATGTTGCCGCTTTGATTCTTAAAAATGTTGTAGGTTTGTGGTAACAGTTTTCCTCATTTATGTATACTTAGGATTTAAGGAACAATAATTTGATCTTTTTATCTCTTTTCTGTTGAAAATACTAGTATAATTGATGAGGATCTTGCTTATTCCTATTCTAGTTAGTTATCACCATCTCTCTTCTGTTCCTTAACTGTGAAATAAAAGCTTTTTTTGTTTTAAAACATCTCATTTAGGAATATCCCAGTTCATACTTGCTCAGATATCTTTCTTTGCTTGCATGTATGAAATAATATGATCCTTCCTGAGCTATAGCTGATGACGGAACGCTTACTAGTTCAGATCTGATGATTTCTTCTACTGAGATTATTTAGCTAGCATGTGCTCTCTGATCTCTTCATCTATTTATTTTTTATAATACCTTTGAAGTTTTGGACGTCTGCCATCTTATTAATAAATGCTATTTGGATGGTTGGGATTGATAGGCGGCATGAAAACTGCTAAATAGTGGAGAAATTTTTTGAAAATGGGAGATAGAATATTGATAATAGTGCAATAAGAGTATTAGGTGATAGCAATATCTCTCTTCTGTTCCTTAACTGTGAAATAAAAGCTTTTTTTGTTTTAAAACATCTCATTTAGGAATATC

Network for GWHGAAEX011023

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00013.28	KH_1	39	83	5.70E-09
PF00013.28	KH_1	137	206	1.70E-11
PF00013.28	KH_1	302	354	1.20E-10
PF00013.28	KH_1	383	447	6.60E-14
PF00013.28	KH_1	542	604	2.60E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	329.390
SRP064423	SRR2545915	Juvenile tuber	255.460
SRP108465	SRR5643513	five period of Gastrodia elata	123.170
	SRR5643514	five period of Gastrodia elata	105.780
	SRR5643515	five period of Gastrodia elata	106.450
	SRR5643524	five period of Gastrodia elata	107.380
	SRR5643525	five period of Gastrodia elata	87.250
	SRR5643528	five period of Gastrodia elata	70.330
	SRR5643658	five period of Gastrodia elata	85.120
	SRR5643659	five period of Gastrodia elata	130.660
	SRR5643660	five period of Gastrodia elata	155.140
	SRR5643661	five period of Gastrodia elata	120.300
	SRR5643662	five period of Gastrodia elata	124.920
	SRR5643663	five period of Gastrodia elata	138.730
	SRR5643664	five period of Gastrodia elata	128.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	155.670
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	110.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	135.070
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	193.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	170.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	201.250
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	162.840
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	168.450
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	126.620
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	138.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	122.200
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	122.200
SRP279888	Gastro	Gastrodia elata tuber	163.02
	Juven	Juvenile tuber	231.12
	Mother_Gastro	Mother tuber of Gastrodia elata	78.47
	Mother_Juven	Mother tuber of Juvenile	167.80