Gene detail

Detail information of GWHGAAEX011033/evm.TU.scaffold_34.68

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|46446872\|ref\|YP_008237.1\|	8.00E-163	3-oxoacyl-ACP synthase [Candidatus Protochlamydia amoebophila UWE25]
KOG	KOG1394	0	3-oxoacyl-(acyl-carrier-protein) synthase (I and II)
nr	gi\|210110425\|gb\|ACJ07142.1\|	0	beta-ketoacyl-ACP synthase II-1 [Arachis hypogaea]
Swissprot	tr\|Q9C9P4\|KASC2_ARATH	0	3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic (Precursor)
trEMBL	tr\|D8KXZ0\|D8KXZ0_ARAHY	0	Beta-ketoacyl-ACP synthase II-1 {ECO:0000313\|EMBL:ACJ07142.1}
TAIR	AT1G74960	0	fatty acid biosynthesis 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000037	3422320	3440929	+

Transcript Sequence
>GWHTAAEX011033 AGCTGTTATGGGGGTAGTACTTGTTAACTTAAGAAGTCGCGAGTGGTTTTATGGCTTGGGTCCTAGCTCATAGGGAAGCGCTCATTTTGGAGAAGGCAGGCTATCATTAATCACTTCCTCGGAATCTTCTTCATCCCTCGCAGAAGTCGCCACACCTCTCCATCGTTTATCCTCCGCATCCTCGATATTCTTGTCCTCCTGTTGGTAGAAATCCATCATTCTTTCTCTGCTTGTCCTTTCCTCGTTCCAATGGCAGCTTCGGCGGCAGCGGCCTCTCCGCTCTGCACGTGGTTTGTGGTTGCGTGCATGTCGATCTCATGTGAAAATGATCGAGTTGCCAGGCCGTCAGCTGGGAGGTCGATGAGGAGGAGGACGGCAGTGTCAAGAATAAGAATGAAGGAACGAGATTCAACCGAAGGGTTGATCTCAGCGTTCCGCGGATCAAGGATTCATGGTTTGATGAGCTCCTTGAATCAGTGCTCTGAATTCTACAGCACGGGTAATGCATCTTCCTTTCGAAGGCAGAGGAGGTCTGCGCGCTCCTTCGTGTCTTTAGGTAGAGCATCGGCTGTGGCTGTTGAGCCTATAAATACTGTAGGAGAAAAGAAGAATATGAAAGCTAGACAGAGGAGAGTTGTTGTTACTGGTATGGGTGTGGTGACTCCATTAGGCCATGATCCTGATGAGTTCTACAATAATCTCCTTGAGGGTGCTAGCGGCATTAGTGAGATAGAAACATTTAACTGTGCTAATTATCCAACGAGAATTGCTGGAGAAATAAAGTCTTTCTCAACGGATGGTTGGGTTGCACCAAAATTGTCCAAACGGATGGACAAATTCATGCTCTATCTGCTTACTGCTGGAAAAAAGGCATTGGCAGATGGTGGCGTTACAGACGAGGTGCTGGGTCACTTGGACAAATCAAGATGTGGGGTTCTCATAGGGTCTGCAATGGGAGGAATGAAGGTTTTCAATGATGCAATTGAGGCTTTGAGGGTATCCTACAAGAAGATGAACCCATTTTGTGTACCATTTGCAACAACGAACATGGGTTCTGCTATGCTTGCAATGGATCTGGGTTGGATGGGACCAAATTACTCGATTTCAACTGCTTGTGCTACCAGCAACTTCTGTATTTTGAATGCAGCAAATCATATTATAAGAGGGGAAGCTGATATGATGCTTTGTGGCGGCTCAGACGCTGCAATTATACCAATTGGATTGGGAGGCTTTGTTGCATGCAGAACACTTTCACAGAGGAATAATGATCCAGCAAAAGCTTCACGCCCTTGGGATGTGGATCGTGATGGATTTGTTTTGGGGGAAGGAGCTGGGGTACTACTTTTGGAAGATCTAGTGCATGCTAAGCAAAGAGGAGCTACTATTTATGCTGAGTTCTTAGGAGGGAGCTTCACTTGTGATGCATATCATATGACTGATCCACATCCTGAGGGGGCTGGTATTATCTTGTGTATTGAAAAATCACTATCAGAATATGGAATAGCCAGAGAGGATGTGAACTATGTAAATGCTCATGCAACTTCAACATTGGCCGGTGATGTGAAGGAGTATCAAGCTCTTTGCCATTGTTTTGGCAAGAATCCTGAGTTGAGAGTCAACTCTACAAAATCTATGATTGGTCATCTCCTTGGAGCTGCAGGTGCAGTTGAAGCTGTTGCTACAATTCAGGCAATTCGAACAGGATTCATTCATCCAAATATTAACCTTGAAAATCCAGATAAGAATGTGGATGCGAGTGTGCTTGTGGGCTCTAAAAAGGAGCATTTGGATGTGAAGGTGGCATTGTCCAACTCCTTCGGGTTTGGGGGTCACAATTCAACAATTATGTTCGGGCGTTACTATTAATGACGTCAACTGCAAATAGGTTCGTTCGTTCTCCTATTGTTTTCTCCTTTTCCTGCTCAGATAGATTCATGGAAAGGATGCCGCCCTTTAATGAAAAACAAATATGACAGTCAAAACATTGGCCTTTTCCAAAGAGAAGTGAGCCCATATTTGTAAGCATAGTAGTATGGTCTGCATCCCAAATATTTACTTGTTTTTCGACGGAAAGGCATCGAATGTATCCAGGAATAGCATATTTTAGGGAAACATTATCTATCAAGTGTAATTTTTTCACCTGAACCATTTCTAGGGCATAATTTCCTATTCATTGAATCACCACTTAAAAAGAATAATCAATTTTAGTCGTTAGTCATATGTTTCATCTTTTATTTTTTGGGAGTGAGTCAGAGCAGCAGAGCAAAGGGGTTTGATTTTCACACCCGACTTTGCTACCATGTAAAATGGTTCTATTGTTTTATTTTTCTTGGGAGAAATGGGAGCGGGACTTCATGTCTCCGCCGTATTCCGATTAGAAAAATGCTATTCTTGCACAAGAATATATATAAAAACGTATCCGGCAACAATAAGAAATTTTATTTTTCTTTTTTATTCTTACAAAAAAATGCATTCAAACAGTTACACATGGATTGACA

Network for GWHGAAEX011033

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00109.25	ketoacyl-synt	127	371	5.40E-60
PF02801.21	Ketoacyl-synt_C	380	493	1.20E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09458	fabF, OXSM, CEM1	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Biotin metabolism	map00780

Gene Ontology

GO term	Ontology	Name
GO:0006633	Biological Process	fatty acid biosynthetic process
GO:0016747	Molecular Function	transferase activity, transferring acyl groups other than amino-acyl groups
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.780
SRP064423	SRR2545915	Juvenile tuber	37.960
SRP108465	SRR5643513	five period of Gastrodia elata	43.440
	SRR5643514	five period of Gastrodia elata	42.190
	SRR5643515	five period of Gastrodia elata	37.530
	SRR5643524	five period of Gastrodia elata	43.930
	SRR5643525	five period of Gastrodia elata	36.480
	SRR5643528	five period of Gastrodia elata	33.340
	SRR5643658	five period of Gastrodia elata	32.190
	SRR5643659	five period of Gastrodia elata	35.750
	SRR5643660	five period of Gastrodia elata	38.470
	SRR5643661	five period of Gastrodia elata	36.680
	SRR5643662	five period of Gastrodia elata	36.120
	SRR5643663	five period of Gastrodia elata	30.550
	SRR5643664	five period of Gastrodia elata	29.530
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.230
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	24.820
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	39.880
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	41.030
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	40.290
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.510
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	40.350
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	41.720
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.480
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	35.720
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	37.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	37.050
SRP279888	Gastro	Gastrodia elata tuber	43.97
	Juven	Juvenile tuber	65.42
	Mother_Gastro	Mother tuber of Gastrodia elata	52.85
	Mother_Juven	Mother tuber of Juvenile	60.50