Gene detail

Detail information of GWHGAAEX011040/evm.TU.scaffold_34.76

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0773	4.00E-113	Transcription factor MEIS1 and related HOX domain proteins
nr	gi\|672185316\|ref\|XP_008812787.1\|	0	PREDICTED: BEL1-like homeodomain protein 7 [Phoenix dactylifera]
Swissprot	tr\|O65685\|BLH6_ARATH	1.00E-113	BEL1-like homeodomain protein 6
trEMBL	tr\|M0U2B7\|M0U2B7_MUSAM	3.00E-160	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P21580_001}
TAIR	AT4G34610	4.00E-113	BEL1-like homeodomain 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000037	3894822	3899502	-

Transcript Sequence
>GWHTAAEX011040 GGGGAAAAGAAAAGGTGATTCCATGATGATTGAAACCTGAAAGTGTAGTACAGTACTGTTAACTCACGTGCAAGATAATATATTAGAAATGTATTTGGCAGCCCTTATAATGGCTTCGACAACTTAGAAGAGAGAGCGGGAGAGAGACCGGGAGAAAGGCGGCGTGAAGAAGACGAAGAGGGGATATTTTGTTTGTTCTGGTTTCTTTTTTTTTTCTAAAGTTGCTTCATTTGGCGGAAATTTTTTTTTTGTGTTAATTTGTTGTTGGAGCTTTTTTCCATTTTAAACTTGGCGGTGGTTATGAAAGGGGATTTTAATTTTTTAATTCCTTGGGATTAGTTTGTTTTCTTCTCCGGAGGATTTGTCTCTACAGATCGGCCAAGGATTCATGCCTTCCTGCTCCCCACGAGGCGCGCAATTATCAGGTGATTTGTAGAAGAAACTATTTGCTGATAGTAATGTTTTTGCCAAAATGGTTATTTATAAATCCTCTCTGCTACACTTTTATTAGACAAGATCAACTTTTGAATAACATTCATTAAAATTCTGTGCTCAAATCAAAGTGTCTGGTTTCCTGCAATCAAAGAAAACAACAATGACAGTTTTCTACCCCGGTGCTACTAATCAGGAGGAGATCATGCCAAGTCTATATTCAAGAGAGCCACCTCGTGCAGCATATCCTGAGATACCGTTCCAAGGAAACCCATTGTATTTTCATCATTCGTTTTCTGCTCCATGTTCTATGAATTCACACGATTCATCTGAAGAAAACATGTATAATTATTGGAGAGAACAAAGAAATGAGATGTTATTTATTCAAACGGTTGGTGGTTCGACTAACTATGATTCAAATATTTTGAGTGGTCAGAATTTATCTTTAAGTGGTTCAACAGTTCAAGGTCAAGGGTTGTCTCTGAGCCTTGCCACACAAGTTTCAGTGCCTACCTTTCATTATTTACCTGCCACAGCAGATATCTCCTTCTCTGCCTCGAATCAATCACCATCTGCAAATGATGTGTCGTGTAAAGAAAATTTGAGAATCAAGCATGTGCTTCTAAATTCCTCTCATCATAAGTTTCCATATCCGGTTAGCTCTAATTTGAACTTGAATTATCTGAAAGCTGCACAAGAGTTACTAGATGAAGTTGTTAATGTTCGAAAAGCATTTAAACAAAAACGATGCAAAACCCAAAATGAATGCAGCCCCAATTGTTTTACTGACTGTAAAGACATTCCATCAGTCCTTCAGGATGATTTTGCCAATTCAAACAAGGAATTTTCATCCTCTGAGAGGCATGAGTTTCAGAATAAGGTGACAAAACTCATGGAGATGGCCGATGAGGTAGATAGAAGATATAAGCATTACTACCATCAAATGCAGATTGTTATGTCTTCATTTGATGTCATTGCTGGTGCTGGGGCTGCTAAACCATACACTACACTTGCCCTTCAAACAATATCTCGCCATTTCCGATGCCTCAGAGACGCTATTAGTGCTCAAATTCAATCAATTCATAAAAAACTTGGAGAACAGGAAAATGGCGATAGCATTCGTTTGTGCCGTCTCCGCTACATAGATCAGCAACTAAGACAGCGTCAGTTTGTGCAGCAGCATGGAATAATGCAGCCTCATGCCTGGAGGCCTCAAAGGGGCTTACCTGAGAACTCTGTTACCATTCTTAGAGCTTGGCTTTTTGAGCACTTCCTTCACCCATATCCAAAGGATTCTGAGAAGCTAATGCTTGCAAGACAAACAGGTTTAACTAGAAGTCAGGTTTCGAATTGGTTCATAAATGCACGCGTTCGCCTTTGGAAGCCTATGATCGAAGAAATGCATAAAGAAGAGCTTGATGATACCGACATAGATGCTAACTCATCATTGGAGAAGATACAAAATATTCAAGAGAATATGAGGTATGCCGTTGACAGGAGAGCAGATATCAAGAGCTCTGATGCTAATATTTGCCGGTCTATTCATTCCAATGAACCCTCGAAATCAAATTTCGTGAATGATCTCGGCACTTGTGGTTCCAATGGCTGCTATGATAACCAGCCTCGGGAGGAAAAATTGGCCGGAGAAGAAAGCAGTCTGCTTCATAGGCATCCTGACGATGGAAGTGGCAGGATCATGGCATATCAGATGCCAGAATTGGGTCATTATAGAGCCAATATGGTTTCTTTAACACTTGGGCTGCAGCACTGGAACTCCAGCCTTCCCGTATCCAATGATGAGAACTGCTTCATGCCAGTGCGAGGGGCCGATGTTTTTGGCTCAAACCCTTTGTCATTAGAGGCTAATGTGGGGGCATATGATTTTGAGAGCATTGGAGATCGGAGCCATGATTGTGAATCTTTGCATTTCATGCAAGATTTCGCACCTTAATGATAATTTATATTTGAGCCGTTGCCTCAATTTTGGCGCTTTTAAAGGATATCAATGATGCCATCAAGTTGCCATTTGCTTATTGTTGAACCTACGTTGCAGTTGTATTATTAGTGTAAAGATTTGTTCATGTTTTAGAGGTGCACATGACTGTGGGATATGTAGAGAGAGAGAAGGGGTTTTATGTGTAATTATTGCCATTTATGATTATCCAACAATAAACTGTTTTTAGATGAGATAGGTATTAGGCATTGCAGAACTGAATAAATTCTCAGTTATATAAATAAATTTGGGAGCAAATATGTGATGCCAGTGCTTGAATAATGGCCATCCTAGTTGCGTTTGTGAGAAATCTGTGTTGTATGGTGTTTTAAAATCATATGCATGAATTTGATTTATTGAAGGATGATGATTCGGCTCTTTCATTGATTTTTCTCTCTTTGTATTGCTTCATTTTAAC

Network for GWHGAAEX011040

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07526.10	POX	172	300	1.00E-43
PF05920.10	Homeobox_KN	365	404	1.60E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-BELL

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	54.010
SRP064423	SRR2545915	Juvenile tuber	54.970
SRP108465	SRR5643513	five period of Gastrodia elata	28.850
	SRR5643514	five period of Gastrodia elata	24.710
	SRR5643515	five period of Gastrodia elata	24.470
	SRR5643524	five period of Gastrodia elata	26.270
	SRR5643525	five period of Gastrodia elata	35.610
	SRR5643528	five period of Gastrodia elata	34.870
	SRR5643658	five period of Gastrodia elata	36.540
	SRR5643659	five period of Gastrodia elata	29.260
	SRR5643660	five period of Gastrodia elata	31.600
	SRR5643661	five period of Gastrodia elata	27.880
	SRR5643662	five period of Gastrodia elata	21.340
	SRR5643663	five period of Gastrodia elata	23.310
	SRR5643664	five period of Gastrodia elata	25.110
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	34.370
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	27.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.100
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	41.680
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	40.440
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	44.800
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	36.050
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	37.880
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	25.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	25.890
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.600
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.600
SRP279888	Gastro	Gastrodia elata tuber	48.47
	Juven	Juvenile tuber	45.83
	Mother_Gastro	Mother tuber of Gastrodia elata	34.40
	Mother_Juven	Mother tuber of Juvenile	41.20