Detail information of GWHGAAEX011041/evm.TU.scaffold_34.78
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307596564|ref|YP_003902881.1| | 3.00E-93 | DNA topoisomerase [Vulcanisaeta distributa DSM 14429] |
| KOG | KOG1956 | 0 | DNA topoisomerase III alpha |
| nr | gi|672175672|ref|XP_008807898.1| | 0 | PREDICTED: DNA topoisomerase 3-alpha isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|C7J0A2|TOP3A_ORYSJ | 0 | DNA topoisomerase 3-alpha |
| trEMBL | tr|A0A068BCF9|A0A068BCF9_COCNU | 0 | DNA topoisomerase {ECO:0000256|RuleBase:RU000518} |
| TAIR | AT5G63920 | 0 | topoisomerase 3alpha |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000037 | 4059139 | 4166870 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011041
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01751.21 | Toprim | 10 | 153 | 3.10E-15 |
| PF01131.19 | Topoisom_bac | 170 | 589 | 1.90E-105 |
| PF01396.18 | zf-C4_Topoisom | 635 | 671 | 3.70E-07 |
| PF00098.22 | zf-CCHC | 763 | 779 | 0.0044 |
| PF06839.11 | zf-GRF | 801 | 839 | 3.60E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03165 | TOP3 | Homologous recombination | map03440 |
| Fanconi anemia pathway | map03460 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006265 | Biological Process | DNA topological change |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003916 | Molecular Function | DNA topoisomerase activity |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003917 | Molecular Function | DNA topoisomerase type I activity |
| GO:0005694 | Cellular Component | chromosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.470 |
| SRR2545915 | Juvenile tuber | 5.110 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.870 |
| SRR5643514 | five period of Gastrodia elata | 4.670 | |
| SRR5643515 | five period of Gastrodia elata | 3.660 | |
| SRR5643524 | five period of Gastrodia elata | 3.880 | |
| SRR5643525 | five period of Gastrodia elata | 2.280 | |
| SRR5643528 | five period of Gastrodia elata | 1.820 | |
| SRR5643658 | five period of Gastrodia elata | 2.180 | |
| SRR5643659 | five period of Gastrodia elata | 4.110 | |
| SRR5643660 | five period of Gastrodia elata | 3.650 | |
| SRR5643661 | five period of Gastrodia elata | 3.910 | |
| SRR5643662 | five period of Gastrodia elata | 3.960 | |
| SRR5643663 | five period of Gastrodia elata | 3.470 | |
| SRR5643664 | five period of Gastrodia elata | 3.240 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.870 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.670 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.580 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.240 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.770 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.680 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.310 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.330 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.40 |
| Juven | Juvenile tuber | 8.13 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.31 | |
| Mother_Juven | Mother tuber of Juvenile | 5.92 |