Gene detail

Detail information of GWHGAAEX011043/evm.TU.scaffold_34.82

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|20807650\|ref\|NP_622821.1\|	1.00E-87	guanosine polyphosphate pyrophosphohydrolase/synthetase [Thermoanaerobacter tengcongensis MB4]
KOG	KOG1157	0	Predicted guanosine polyphosphate pyrophosphohydrolase/synthase
nr	gi\|743822965\|ref\|XP_010932410.1\|	0	PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Elaeis guineensis]
Swissprot	tr\|Q7XAP4\|RSH2_ORYSJ	0	Probable GTP diphosphokinase RSH2, chloroplastic (Precursor)
trEMBL	tr\|I1KHC4\|I1KHC4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G04450.1}
TAIR	AT3G14050	0	RELA/SPOT homolog 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000037	4479567	4485635	+

Transcript Sequence
>GWHTAAEX011043 GAGAAATTAAATAAACCACGTGTCGATTTAGCCGATACGACAAGTGTGAGAAAAGGCCACCGCAACACTCCCTCTCTCTCTCTCTCTAAAGCTTCCTCTTCCTCCATCTTGACGAGGATTTCTCCGGTTCCTTTCACGCCTTTCCGACGAAGCTAGGGTTTCGAATTTATCGAATTCGTTGGCCCCAAATTTTCGACTCCTCGTTCCTCATCTTAATTGACGTCACAACCTGGATCCTCGTCACAGAAAATCCCATCTCTTTCTCCCCAAATCCATCATTTCCGATCTTCCTCCGTCGGTCATAGAAAGCGCGATCTGGTTCTATCAGCCCGATGTCCGTTCCCGCAATCGCGCTTTATGCAACCCAACCGAGTGGGCTATGCTCGTCCCCTCACGATTTCCGATCAACGGAGTGTGAGTTCAGTTCACATGGCCACAAGCCGGCAATCATCGGCGGGCTTTCCTGCCTCCTCTCATCTTCTTATCCCTTCCGCTACTCCGCTGCGACCTCCTTTGAAGAGCTCCGGCTTGATCGAGCAGAGCCATACTCCACTTGCTCGTCTCCGCCCTCCTATAAATGCCGTGATCAGAGTCCCGTTTCTGTCTTCCATGGGCCGATCTCTTGCAGCAGCAGCACTGTGACCTCTGTGAGGAGTCCGCCTTTGCTGAGAAGCTCTCGAGAGTGGGTTTTCAGCGATGTGAGGGCGGGAAGGGATGGTCTGCTTCGCGGATTCATTGGAAGCGCCATGGGCTCATGTTTGGATTACAATCTACCCAGCCTTCCTTTACAGGGAAACTTTGAAGTGGATGATTTGACTTTTAATCTGGAGGAGAGCGTTTCAGAGATTCTGCCCGGCTGCGAGCCCTATGCCAGAGAGTTGCTCTCTGTGGCTCAAGTTAGACATCAGATTTTCCTTGATGAGATTGTGGTAAAGGCGTTTTTTGAAGCAGAGAAAGCTCATAGGGGACAGATGAGGTTGAGTGGTGATCCATATCTGCAACATTGCGTTGAAACTGCAGTTTTGCTGGCTAAGATTGGTGCTAATTCAACTGTCGTAGCGGCTGGACTCTTGCATGATACGCTTGATGATTCTTTTATGGATTATGATTATATTTTGCAAAGCTTTGGGGCTCCTGTTGCTGATCTTGTTGAAGAGGTTTCAAAGCTTAGTCATCTAAGCAAGCTTGCACGTGAAAACAATACTGCCAGTAAAACAGTAGAGGCTGACAGATTACACACAATATTTCTTGCAATGGCAGATGCCAGAGCTGTTCTTATAAAACTTGCCGACCGACTTCATAATATGATGACACTTGAGGTCTTACCTGCAGCTAAACAGCAGAGGTTTGCGAAAGAAACTCTAGAGATATTCGTTCCTCTCGCAAACCGATTGGGTATTTCGAGTTGGAAGGACCAGTTAGAAAATTTCTGCTTAAAGTACCTTTATCCACATGAGTACGAGGAACTATCACTCAAACTGGTTGGGTGCTTTGATGAAGCAAAGGTCACATCTTCCAAACAGAAGTTGGAGCAAGCTCTCAATAAGGAAGGCCTTTCATATCATGTTCTTTCTGGTAGACATAAGAGCTTGTTCAGCATTTATTCCAAGATGATCAAGAAGAAGTTAACTATGGATGAGGTTCATGACATTTATGGGTTAAGATTGATTGTTGAGAAAGAGGAGGATTGCTATAGGGCTCTTGAAACTGTTCATCGTCTATGGCCTGATGCTTTGGGCAAGCTCAAAGACTATGTTGCACATCCCAAATTTAATGGGTATCGATCCCTACACACTGTTGTGATTGGCGAAGATAAGTTGCCGCTGGAGGTTCAGATTCGAACCAAAGAGATGCACATACAGGCAGAGTTTGGATTTGCCGCTCATTGGAGATACAAAGAGGATGACTGCCAGCATTCTTCCTTTGTTCTCCAAATGGTGGAGTGGGCAAGATGGGTTGTTACATGGCAGTGTGAGGCGATGGATGCTGAAAAGCACTTGTCATTTGGTGATGCTCATTCAACTAGGCCAAAATGTCCTTTCCCTTCTCATTATGATGACTGCCGTCACTCTTGCACCCACACTCATCAGTGTGATCATGATGGACCTATCTTCACCATCATGCTTGAAAACGATAAGATGTCTGTCCAGGAGTTTGCACCGAACTCAACCATAATGGATTTACTGGAGATTTGTGGAAGAGGGAATCAAAGAGATCAACCTTACTACCGGTTTGCAATGAAGGAAGAACTGAGGCCGAGGCTGAATCGTAAGCCTGTGAGCGACCCCAACCAGAAACTGAAAATGGGTGATGTAGTCGAGCTGACGCCGGCCATCCCCGACAAATCTCTCACAGAATACAGAAAAGAACTTAGGCGCATGTATAATCATGGCTTAACTGTGTCATCCCCGCCATGCCTTAATAAGCTCTGACACAGCTTAACTTTTATGTGGTTAAAAGCCAAGCCTCATTTCCCTGTATATATGAACTTGTACATAATTTCATCAGTGCTAGGGTTTGTTGATATTAGATAGGCTAATTTCTAATGAATATATCTCAGTTGAAAATGCTGAATTCTCTTTATAAAAACATAGCGTACATAGTTTTTCTAGCTCTCTGAGATTTCAAGCAATTTTGGACGAGGCAAATGGCACTATTAGACAGATCCAAGCACTATATAATGTCCTGTTGCTAATAATCATACACTTCTAATTTATC

Network for GWHGAAEX011043

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13328.5	HD_4	206	356	3.00E-41
PF04607.16	RelA_SpoT	415	524	2.50E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00951	relA	Metabolic pathways	map01100
K00951	relA	Purine metabolism	map00230

Gene Ontology

GO term	Ontology	Name
GO:0015969	Biological Process	guanosine tetraphosphate metabolic process
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.190
SRP064423	SRR2545915	Juvenile tuber	15.110
SRP108465	SRR5643513	five period of Gastrodia elata	19.270
	SRR5643514	five period of Gastrodia elata	24.150
	SRR5643515	five period of Gastrodia elata	19.990
	SRR5643524	five period of Gastrodia elata	26.580
	SRR5643525	five period of Gastrodia elata	38.260
	SRR5643528	five period of Gastrodia elata	34.920
	SRR5643658	five period of Gastrodia elata	65.970
	SRR5643659	five period of Gastrodia elata	8.620
	SRR5643660	five period of Gastrodia elata	9.090
	SRR5643661	five period of Gastrodia elata	9.500
	SRR5643662	five period of Gastrodia elata	7.100
	SRR5643663	five period of Gastrodia elata	7.230
	SRR5643664	five period of Gastrodia elata	6.490
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.320
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.930
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.470
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	16.620
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.940
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.860
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.330
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.680
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.680
SRP279888	Gastro	Gastrodia elata tuber	7.92
	Juven	Juvenile tuber	13.88
	Mother_Gastro	Mother tuber of Gastrodia elata	47.69
	Mother_Juven	Mother tuber of Juvenile	22.66