Detail information of GWHGAAEX011044/evm.TU.scaffold_34.83
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|148654221|ref|YP_001274426.1| | 9.00E-08 | protein-glutamate O-methyltransferase [Roseiflexus sp. RS-1] |
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743839485|ref|XP_010937017.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g65570 [Elaeis guineensis] |
| Swissprot | tr|Q9LSL8|PP446_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g65570 |
| trEMBL | tr|M5WFM3|M5WFM3_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ08058.1} |
| TAIR | AT5G65570 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000037 | 4487388 | 4489697 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011044
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 38 | 85 | 1.00E-12 |
| PF01535.19 | PPR | 216 | 236 | 0.14 |
| PF01535.19 | PPR | 244 | 270 | 0.082 |
| PF13041.5 | PPR_2 | 342 | 389 | 1.20E-09 |
| PF01535.19 | PPR | 418 | 442 | 0.0014 |
| PF14432.5 | DYW_deaminase | 516 | 640 | 2.00E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.670 |
| SRR2545915 | Juvenile tuber | 1.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.520 |
| SRR5643514 | five period of Gastrodia elata | 2.700 | |
| SRR5643515 | five period of Gastrodia elata | 1.720 | |
| SRR5643524 | five period of Gastrodia elata | 2.060 | |
| SRR5643525 | five period of Gastrodia elata | 1.090 | |
| SRR5643528 | five period of Gastrodia elata | 0.270 | |
| SRR5643658 | five period of Gastrodia elata | 0.280 | |
| SRR5643659 | five period of Gastrodia elata | 3.600 | |
| SRR5643660 | five period of Gastrodia elata | 3.170 | |
| SRR5643661 | five period of Gastrodia elata | 3.650 | |
| SRR5643662 | five period of Gastrodia elata | 3.460 | |
| SRR5643663 | five period of Gastrodia elata | 3.060 | |
| SRR5643664 | five period of Gastrodia elata | 2.610 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.930 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.220 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.330 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.240 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.62 |
| Juven | Juvenile tuber | 1.39 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.90 | |
| Mother_Juven | Mother tuber of Juvenile | 0.39 |