Gene detail

Detail information of GWHGAAEX011045/evm.TU.scaffold_34.86

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|543962281\|ref\|YP_008545316.1\|	9.00E-22	protein kinase:GAF [Sulfuricella denitrificans skB26]
KOG	KOG1187	6.00E-152	Serine/threonine protein kinase
nr	gi\|672171711\|ref\|XP_008805930.1\|	0	PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q8H1D6\|RBK1_ARATH	2.00E-150	Receptor-like cytosolic serine/threonine-protein kinase RBK1
trEMBL	tr\|M0S4I7\|M0S4I7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P02460_001}
TAIR	AT5G65530	6.00E-152	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000037	4564129	4574927	-

Transcript Sequence
>GWHTAAEX011045 CTAATTTCTAAAGGAGCCGGCTTCGTTAATTTCGGTTTTCAGTGCGCAAATTCCGCTCTATCTTTCTTTCAAGCTCTCCCCCCTCCTCTCTCTATATGAGAATCTGAGAATGGCAGCGTTCTGAAGGAAAACAAAAATTAAAAGCATAAAAACAGAGTTCCTCCATAAGTTCAAGAAAAGCAGCCATCTTTGCTTCCATGGATTAAATTCTGAGCTCCTTCTTCTCCACTAAGTTTGTGGATGCTGAGAGTGTTAGAAGCAAACTTAAGAAACAATGGCTTCTAAGAAAGAACTTATCCATGAAGAAACATCGAACCTCTCGGCGGGATTTAAAAGAGAAGAAAGCAAAGATAAATCCAAAAGTGAGTCAGAAGAGAACAGCACAGACATCTCTGGACAAATCTCTCCGAGAGGAGTTTTAGAGATTCCGATATCTAGTGTACATTCTTATGGTGGAAGCAGCAATGAAAGTTCATCCTCTACAGATAGATCAACAAGTCCTGATGGGACTGTACTAGAATGTAACAGTTCACAGTGGAGAAATCTGATTGGTGGGCTACTTTTGAGAAAGACAAAGTCCATAAGGAGGTTGTCGACCTTCCCTCCGGCTATAAAGCACTCAAGTTTGGAGCGGAAATGCTGGGGAACTTTTCAGAGCGGTGAAGATACATCCAAGAGTGGATTGGTTCCTTTGGAAATTCCAATGAGGAAGCCATATTGGAGGAATTTTAAACTCCAGGAGCTTGTGTTGGCGACCAATAACTTTAGTAACGAAAATTTGATAGGGAAAGGGGGGCATGCAGAAGTTTTCAAAGGTTGTCTTCCTGATGAACAGCTTGTGGCTGTCAAGAGGCTAACTAAGAAGGACAATGAAGAAGGGAGAATCAATGATTTCTTGTCCGAGCTAGGAATCATTGCCCATGTTAATCATCCAAATGCTGCACAACTCGTGGGATTTTGCATCGAGGGAGGTTTACATATGGTTCTGCAATTCTCTCCACATGGAAGCTTGGCTTCTGTGCTTCATGGTTCTAAGGAGAGACTCAACTGGAAGGTCAGGTTTGGAATTGCTTTAGGGATTGCAGAAGGGCTCTGCTATCTTCATGAGGGATGCCAAAGGCGCATAATCCATAGAGACATTAAAGCCTCCAACATTCTTCTCACTGAGGATTACAAGCCTCAGATTTCAGACTTTGGGCTTGCAAAATGGCTCCCAGACAAATGGATGCACCATACTGTGTTCCCTATTGAAGGCACTTTTGGATATATGGCACCTGAGTATTTCATGCATGGAGTGGTGAATGAGAAGACTGATGTCTTTGCATTTGGGGTATTGCTGCTTGAGCTGATAACTGGCAGAAGAGCTGTTGATTCCTGCACAAGAAGCCTGGTGATATGGGCAAAGCCTCTTCTCGATGCCAATGATTCCAAAGGACTGAGGGATCCATCATTAGGAGATGATGCCAATCCTGAAGAACTGAAGCGTGCAGTCTCAGTAGCTAAAATGTGCATTCATCATATATCAACTTCGAGGCCTACAATGAATATGGCAGTTCGGTTCTTAAGAGGGGAAGTAGGAGCTCATGAGATCACTGGAAGAGCTTTGAAGCCGCCAACAAGACCACAGCTGCTGGATTCATGTGAGTTTGAAGATTATACATGTTCCAAGTATTTGAGTGATCTCCATAGGCACAAGCAGCTGGCTTTAGAGCAATGATGAAGCCTTTAATTAGAGGGAACCTGTAAAGATGTTCAAATAGGCATTTATTTCTTCACTGTTTCTGTGTCATGTTAGTTGTTGTTATTCGCAAATTAAGGAGTTTGCTTGCTCAAGTCAATGCAATTTTGACAAATCCTCACTGTTTAAATTTAGTATTTTATAACAAAAAAAAATGCGCAACTGAATTATCTTCTTAGTAAAACTTTTGTTAATTGGCCAACAATTATAATTGTGAATGTAAATGAGC

Network for GWHGAAEX011045

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.16	Pkinase_Tyr	167	428	2.00E-41

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VI

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.290
SRP064423	SRR2545915	Juvenile tuber	1.980
SRP108465	SRR5643513	five period of Gastrodia elata	5.780
	SRR5643514	five period of Gastrodia elata	5.030
	SRR5643515	five period of Gastrodia elata	2.880
	SRR5643524	five period of Gastrodia elata	4.630
	SRR5643525	five period of Gastrodia elata	2.230
	SRR5643528	five period of Gastrodia elata	1.500
	SRR5643658	five period of Gastrodia elata	1.860
	SRR5643659	five period of Gastrodia elata	0.100
	SRR5643660	five period of Gastrodia elata	0.070
	SRR5643661	five period of Gastrodia elata	0.070
	SRR5643662	five period of Gastrodia elata	0.180
	SRR5643663	five period of Gastrodia elata	0.000
	SRR5643664	five period of Gastrodia elata	0.070
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.630
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.560
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.170
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.820
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.700
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.690
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.040
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.140
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.710
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.490
SRP279888	Gastro	Gastrodia elata tuber	0.29
	Juven	Juvenile tuber	2.80
	Mother_Gastro	Mother tuber of Gastrodia elata	4.66
	Mother_Juven	Mother tuber of Juvenile	8.81