Gene detail

Detail information of GWHGAAEX011047/evm.TU.scaffold_34.90

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1075	7.00E-12	FOG: Reverse transcriptase
nr	gi\|661873446\|emb\|CDP20930.1\|	2.57E-28	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068VJB8\|A0A068VJB8_COFCA	1.00E-28	Coffea canephora
TAIR	AT3G43320	7.00E-12	transposable element gene

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000037	4821372	4823500	+

Transcript Sequence
>GWHTAAEX011047 GCACGCGCGATAGTCGCTCGCAAGGTGCTTGGGAGGCGATTCTGAAAGTGATCCTAGGTTTTCTTCCGTCGGCCTGGCTAACGGACCACAATCCTGGTGAAAGCGTTCGAAAAAACTTCTTTCGCTCTTGATCTGGTGATATCTAAATTTTCTAATTTTTGTTTTTCGTGTTTTCTTCCCTTGATGATCTAATGGAGATATCTTCTACCATTAGATCGTTTAAGGAGATAGTAGAGAGTTCCTCTCATACGATCTCTAGGGAGATCTCTTCTGTTAATGGTGTCCATGCGATTTACTTTTTTGAAAACAAAATTGTCAAACTTGCGGATCATCATGCTCTTTCCCTAATCGGTAAAATTAATAAGAAAAAACAAAATTTTGGATTAGTTGATGAATTTATTAATGGATTAAAATTACATGGTTTGGTGAACATCCGTGCATTTGACTCCCAATGTGTATTTTTTAGTTTTACCTCTGACCTTGCCTATGCAAGAGTATTCTCTAAAGGATCCTATGATCTCAAAGGATATACTCTTAAATTTTTCAAATGGGATCCGTATATATATGTAACTTTGGACTCTCTAATCTCTCCGATTTGGTTCAACCTACCAGGATTACGTCTGCATTTCGTTAAAAAAGTAATCTTATTTATTATTTTAAAAGCTATTGGGAGACCTCTTCAACTGGATAGAAACACAACCATTGAGAGAAATGTTGCTGCTCCCGGAATCCTAATTGAGCTAAATCTGGCCTCACAACTTCCGGAAAAAATTTGGCTTGGGCCGAGAGAGCGTGGATACTTTCAAACTATCATTTATGAAAACTTACCTTTATATTGCATTTGGTGCCAGACTCTAGGACATCACTCCCAATCCTGCACTCATACCCTCAGAAATAGCCCAGTAAGGCCCTTAGAAAATACTTTGATCCCTAGACCCAATGATGAATTACTGCTTGTATGTGATAAGGCAATTGTTTCTATATTAAATCCTTTGGACACTATTTCTACTGATGTTAATTGTAATGATAATAGAAATAATGTCCCTAATGCTACTAATGTTGAGAATACTAATCCTACTGCTAATGTTGAGAATACATTGAAAGATAAGCATACAAATGGAATTATTATTGAAACTAATCTTATTGCTATAGTTAATTATGTCTCTTTTGCTCCTGCTATTTCCTTTAATATATTTGAAACTAAAATTTTGGCTAGTATATGCAATGATAATGGAAATGTAGTCTTTCAAATGCTGAAAACATGGCTGCACTTCATAATGTCTCAAATGTTGTAAATTTGGCTATTAAGAGTAGTGATAATGGATATGTATATTTAGAAAATGCTACTCTTTATAATGCTACAAATGATGGATTTATTACTCCTAAGGCTAAAAATGTTGAGAATTCTTTTTAATTTAATCTCACTAATGCTATTAGTGTTGAAACGGAACCTAATGTTTTAGTTCATAATATTTTTTAGGGATTTCCTATAAGAAATATAAAGGAAGCTTTATGTTTTACAAAAATTTCAGGTGAGAATGCTGAATTTGCTAGCAACAATGTGGAAAAGAGTTTGTATACTCCTGCTCTCACAACTTCTGCCATTACAACTATTAATTATGTAAATATTATTCAATCCAAGTTTTCTGCAGGAAAAAATAATTTTGATACCGATACTAATGGATCTGCTTATGCAAGAATAGTTAATAGTGATTATGGCTTAAAAGTTTTAGTGAACAATTCATTTTCTAATAATAGCTTAATGTAAAAAACTTCTAAAAAAATGCTGAAAATAAATTTGACATTAATGATATTGTATCAAATGTAGATAATAATACTGATTCTCATTCCAAAATAAATGTTGAAATTATCACTGAAAAAGAAAATGAAAATGGGGTTCCAAAGAGGAATGCCACTGAAGCAGATAATTTTGAAAGTGATTTAGTTTACTACTTGTAAAACGTTTAATTAATCAAATTTATCACCAAAAATATTCTCAATTTTATATTATTGATTCGAAAGAAAAATGTTACAAAAACTTATTTTTTTATTATCTTTCTTATCAAATGCTATTAGAAGGTTTTATCTTCATTTTAGAAATACCATTATCCTCAAAGTTAGTAGCGTTG

Network for GWHGAAEX011047

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14111.5	DUF4283	43	170	1.10E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.370
SRP064423	SRR2545915	Juvenile tuber	6.240
SRP108465	SRR5643513	five period of Gastrodia elata	2.460
	SRR5643514	five period of Gastrodia elata	3.860
	SRR5643515	five period of Gastrodia elata	4.310
	SRR5643524	five period of Gastrodia elata	4.360
	SRR5643525	five period of Gastrodia elata	3.200
	SRR5643528	five period of Gastrodia elata	3.040
	SRR5643658	five period of Gastrodia elata	4.180
	SRR5643659	five period of Gastrodia elata	6.140
	SRR5643660	five period of Gastrodia elata	6.800
	SRR5643661	five period of Gastrodia elata	4.870
	SRR5643662	five period of Gastrodia elata	4.800
	SRR5643663	five period of Gastrodia elata	6.810
	SRR5643664	five period of Gastrodia elata	3.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.910
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.660
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.570
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.280
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.930
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.320
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.630
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.260
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.020
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.110
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.560
SRP279888	Gastro	Gastrodia elata tuber	7.32
	Juven	Juvenile tuber	11.98
	Mother_Gastro	Mother tuber of Gastrodia elata	5.39
	Mother_Juven	Mother tuber of Juvenile	12.15