Detail information of GWHGAAEX011049/evm.TU.scaffold_34.95


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|113478270|ref|YP_724331.1|2.00E-24cyclic nucleotide-binding protein [Trichodesmium erythraeum IMS101]
KOGKOG04980K+-channel ERG and related proteins, contain PAS/PAC sensor domain
nrgi|695072849|ref|XP_009383566.1|0PREDICTED: putative cyclic nucleotide-gated ion channel 18 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9LEQ3|CNG18_ARATH0Putative cyclic nucleotide-gated ion channel 18
trEMBLtr|M0RRH3|M0RRH3_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P11930_001}
TAIRAT5G148700cyclic nucleotide-gated channel 18

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003749096084914309-
Transcript Sequence

Network for GWHGAAEX011049

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00520.30Ion_trans533772.70E-27
PF00027.28cNMP_binding4765641.00E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05391CNGC Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0006811Biological Procession transport
GO:0005216Molecular Functionion channel activity
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.240
SRR2545915Juvenile tuber0.350
SRP108465SRR5643513five period of Gastrodia elata0.360
SRR5643514five period of Gastrodia elata0.560
SRR5643515five period of Gastrodia elata0.200
SRR5643524five period of Gastrodia elata0.530
SRR5643525five period of Gastrodia elata0.170
SRR5643528five period of Gastrodia elata0.180
SRR5643658five period of Gastrodia elata0.030
SRR5643659five period of Gastrodia elata0.180
SRR5643660five period of Gastrodia elata0.060
SRR5643661five period of Gastrodia elata0.230
SRR5643662five period of Gastrodia elata0.030
SRR5643663five period of Gastrodia elata0.120
SRR5643664five period of Gastrodia elata0.090
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.150
SRR6049655Rhizomagastrodiae_C368-T10_good_11.490
SRR6049656Rhizomagastrodiae_C368-T07_good_10.620
SRR6049657Rhizomagastrodiae_C368-T07_good_10.520
SRR6049658Rhizomagastrodiae_C368-T04_good_10.320
SRR6049659Rhizomagastrodiae_C368-T04_good_10.100
SRR6049660Rhizomagastrodiae_C368-T01_good_10.210
SRR6049661Rhizomagastrodiae_C368-T04_good_10.280
SRR6049662Rhizomagastrodiae_C368-T01_good_11.160
SRR6049663Rhizomagastrodiae_C368-T01_good_10.420
SRR6049664Rhizomagastrodiae_C368-T10_good_10.810
SRR6049665Rhizomagastrodiae_C368-T10_good_10.810
SRP279888GastroGastrodia elata tuber 0.10
JuvenJuvenile tuber0.04
Mother_GastroMother tuber of Gastrodia elata 0.10
Mother_JuvenMother tuber of Juvenile 0.06