Gene detail

Detail information of GWHGAAEX011051/evm.TU.scaffold_34.98_evm.TU.scaffold_34.99

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743768019\|ref\|XP_010914281.1\|	1.24E-97	PREDICTED: myb family transcription factor APL isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9SAK5\|APL_ARATH	2.00E-74	Myb family transcription factor APL
trEMBL	tr\|W9R1F0\|W9R1F0_9ROSA	2.00E-88	Myb family transcription factor APL {ECO:0000313\|EMBL:EXB51246.1}
TAIR	AT1G79430	8.00E-77	Homeodomain-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000037	4934382	4936467	-

Transcript Sequence
>GWHTAAEX011051 ATCTCATCTTGAAATAATTAGAAAGTATGTGCTACAATTTAGTTTCATTGCTCCAATCAAACCATGCTTATTCCATAATATGTTCTTACTCTCTATTTAAAACATAGAAAATGAAGAATCTCAGCATTTCTTTCTTTTTTTTTCCTTTGCCAAAGTGGGCTTGGAGCTTTATTTGAGCATAGAATAATCATGCTTTCTTTACAAGAGAGAGAGAGAGAGAATAAACGTTAAGGAATTCTTTGATTGTGGAGGTGAGTGAAAAGAGGAGAGAGAAGAGTAGAAAAAATGTTTTCGCATGAAATCAAAAGTCTGTTGAGAAAGAAAACGCACCCTATTCCTTCATATATGCCATCCTTTGTTCTTGAATCTCTTCCCTGAGAAAGATAAACAACAAGCTAGAGATAGAAAGAGGAGAGAATGTTCCCTTCAAAGAAGACAGCTACGAATTCACATGAAGGGCCTTTATCATATGTTCAAGGAGACTCGGGCCTTGTTCTTACAACAGACCCTAAGCCTCGCCTTCGGTGGACTGTAGAACTCCACGACCGCTTCGTCGATGCCATCACTCAGCTCGGGGGGCCTGACAAGGCCACCCCGAAGACGATTATGAGGGTTATGGGCGTTAAGGGTCTTACGCTGTATCACCTGAAAAGCCATCTTCAGAAATTTAGGCTCGGGAAGCAGCTGCATAAGGATTTGAAGGACCTTTCTAATGATGCACTAGACTTGCGTAGACTTGGAGCCTCTTCATCTGGGACGATAGCTCGAACAATGACTGCTAGAAACACACAGACAACTGATGCACTTCGGATGCAGTTGGAGGTTCAAAGAAGACTCCATGACCAATTAGAGGTGCAAAAGAGCTTGCAAATGAGAGTTGAAGCCCAGGGAAAATACATGCAATCCATCTTAGATAAGGCTTGCCAAGCTCTTACAGCATGTGAGAGCATCCAACCAAACGCAGATGCATCCAAAACATTCAGCAACCATGGATCCATGCATCATCATGACATGCCGAAGCACATGACAACATTATCATCATCATCCTCCTCCAAAATGGCCATCATCTTCCCATCCCTTCAAAACCTCCATCTCTTCGGCCCCCATCAACCGCGTAACGATGACAGTGCTACCGCAAGCATTTTGTTAGGCTCGGAGAAAAGCCAGCAGCACGGATGTTACAGCAACCAGAAAGGGAAAGACACTTTGGTTTGGAGTGATCATGAGTTTATGGGGGCAGAATCTAATGAGGAAGAAGATCGTGAGATTTCATGCTCTGTTCTTAGCGGGAGTATGGATATGGAATCTATGATGGACGTTTTTGAGGGGAAAGTGCCCATGCTTACAACTGCAAGAGAAGAAAGTAGAAAAGCTTCCGTTTTGGCAATGGATTTGTCTTACTGATGGCATGCTCATGCATGAACCTCTTAACTATCTTTCTTTATAGGGATTTTTTGCATGTCTTTTGATGCAAGGTATAAATTTTAAGAACATTTTTAAGAAAATGGCTTTGATTTTAGTGTATGTGTGCTATACTCACTTTAATGCTACTGCGATTGAACAAATCAAAATAAAAGAGATATTATTATTTATATTATTGTTTGCTTCTTCTTCAAATTTAGCATCACAGACCAAAATTAATTTTTG

Network for GWHGAAEX011051

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module14

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	34	84	5.60E-07
PF14379.5	Myb_CC_LHEQLE	125	170	6.70E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.130
SRP064423	SRR2545915	Juvenile tuber	4.970
SRP108465	SRR5643513	five period of Gastrodia elata	5.010
	SRR5643514	five period of Gastrodia elata	9.290
	SRR5643515	five period of Gastrodia elata	7.060
	SRR5643524	five period of Gastrodia elata	7.540
	SRR5643525	five period of Gastrodia elata	40.010
	SRR5643528	five period of Gastrodia elata	28.320
	SRR5643658	five period of Gastrodia elata	40.210
	SRR5643659	five period of Gastrodia elata	6.840
	SRR5643660	five period of Gastrodia elata	5.820
	SRR5643661	five period of Gastrodia elata	11.410
	SRR5643662	five period of Gastrodia elata	13.680
	SRR5643663	five period of Gastrodia elata	7.540
	SRR5643664	five period of Gastrodia elata	13.290
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.610
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.720
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.170
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.480
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.150
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.430
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.510
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.350
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.800
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.800
SRP279888	Gastro	Gastrodia elata tuber	26.48
	Juven	Juvenile tuber	2.26
	Mother_Gastro	Mother tuber of Gastrodia elata	41.99
	Mother_Juven	Mother tuber of Juvenile	3.02