Detail information of GWHGAAEX011052/evm.TU.scaffold_34.104


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|347538274|ref|YP_004845698.1|0succinate-semialdehyde dehydrogenase [Pseudogulbenkiania sp. NH8B]
KOGKOG24510Aldehyde dehydrogenase
nrgi|743768014|ref|XP_010914279.1|0PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial isoform X1 [Elaeis guineensis]
Swissprottr|B9F3B6|SSDH_ORYSJ0Succinate-semialdehyde dehydrogenase, mitochondrial (Precursor)
trEMBLtr|A0A096S3X0|A0A096S3X0_MAIZE0Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G128114_P01}
TAIRAT1G794400aldehyde dehydrogenase 5F1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003750492015124922-
Transcript Sequence

Network for GWHGAAEX011052

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00171.21Aldedh585173.50E-167
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K17761SSADH Metabolic pathways map01100
Butanoate metabolismmap00650
Pyrimidine metabolismmap00240

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0009450Biological Processgamma-aminobutyric acid catabolic process
GO:0009013Molecular Functionsuccinate-semialdehyde dehydrogenase [NAD(P)+] activity
GO:0016491Molecular Functionoxidoreductase activity
GO:0016620Molecular Functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms35.150
SRR2545915Juvenile tuber30.870
SRP108465SRR5643513five period of Gastrodia elata36.150
SRR5643514five period of Gastrodia elata45.050
SRR5643515five period of Gastrodia elata34.840
SRR5643524five period of Gastrodia elata37.070
SRR5643525five period of Gastrodia elata29.180
SRR5643528five period of Gastrodia elata26.490
SRR5643658five period of Gastrodia elata30.110
SRR5643659five period of Gastrodia elata27.920
SRR5643660five period of Gastrodia elata26.500
SRR5643661five period of Gastrodia elata27.820
SRR5643662five period of Gastrodia elata24.850
SRR5643663five period of Gastrodia elata24.310
SRR5643664five period of Gastrodia elata24.360
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_134.730
SRR6049655Rhizomagastrodiae_C368-T10_good_152.880
SRR6049656Rhizomagastrodiae_C368-T07_good_143.650
SRR6049657Rhizomagastrodiae_C368-T07_good_132.020
SRR6049658Rhizomagastrodiae_C368-T04_good_135.120
SRR6049659Rhizomagastrodiae_C368-T04_good_130.610
SRR6049660Rhizomagastrodiae_C368-T01_good_135.330
SRR6049661Rhizomagastrodiae_C368-T04_good_138.020
SRR6049662Rhizomagastrodiae_C368-T01_good_143.870
SRR6049663Rhizomagastrodiae_C368-T01_good_140.000
SRR6049664Rhizomagastrodiae_C368-T10_good_152.460
SRR6049665Rhizomagastrodiae_C368-T10_good_152.460
SRP279888GastroGastrodia elata tuber 21.04
JuvenJuvenile tuber20.84
Mother_GastroMother tuber of Gastrodia elata 20.22
Mother_JuvenMother tuber of Juvenile 10.16