Detail information of GWHGAAEX011056/evm.TU.scaffold_34.109
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|152998133|ref|YP_001342968.1| | 2.00E-17 | Mg2 transporter protein CorA family protein [Marinomonas sp. MWYL1] |
| nr | gi|743855694|ref|XP_010941556.1| | 0 | PREDICTED: uncharacterized protein LOC105059806 [Elaeis guineensis] |
| trEMBL | tr|A0A061E1V9|A0A061E1V9_THECC | 0 | Magnesium transporter CorA-like family protein isoform 1 {ECO:0000313|EMBL:EOX98607.1} |
| TAIR | AT2G04305 | 7.00E-100 | Magnesium transporter CorA-like family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000037 | 5342115 | 5358641 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011056
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01544.17 | CorA | 63 | 397 | 8.10E-29 |
| PF03916.13 | NrfD | 292 | 398 | 7.00E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030001 | Biological Process | metal ion transport |
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0046873 | Molecular Function | metal ion transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.940 |
| SRR2545915 | Juvenile tuber | 10.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.470 |
| SRR5643514 | five period of Gastrodia elata | 15.360 | |
| SRR5643515 | five period of Gastrodia elata | 13.600 | |
| SRR5643524 | five period of Gastrodia elata | 15.040 | |
| SRR5643525 | five period of Gastrodia elata | 21.760 | |
| SRR5643528 | five period of Gastrodia elata | 20.420 | |
| SRR5643658 | five period of Gastrodia elata | 26.740 | |
| SRR5643659 | five period of Gastrodia elata | 10.900 | |
| SRR5643660 | five period of Gastrodia elata | 10.230 | |
| SRR5643661 | five period of Gastrodia elata | 11.140 | |
| SRR5643662 | five period of Gastrodia elata | 12.350 | |
| SRR5643663 | five period of Gastrodia elata | 9.980 | |
| SRR5643664 | five period of Gastrodia elata | 10.470 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.680 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.530 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.160 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.370 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.690 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.690 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.72 |
| Juven | Juvenile tuber | 12.35 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 25.55 | |
| Mother_Juven | Mother tuber of Juvenile | 19.45 |