Gene detail

Detail information of GWHGAAEX011063/evm.TU.scaffold_34.118

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743814088\|ref\|XP_010929923.1\|	1.57E-60	PREDICTED: uncharacterized protein LOC105051277 isoform X2 [Elaeis guineensis]
trEMBL	tr\|K7TSY4\|K7TSY4_MAIZE	4.00E-39	Uncharacterized protein {ECO:0000313\|EMBL:AFW58127.1, ECO:0000313\|EnsemblPlants:GRMZM2G168166_P02}

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000037	5872344	5876241	+

Transcript Sequence
>GWHTAAEX011063 ACAAAACATTTTAATCGGTTTAAAACCCATTAAAACCCTAGATTTTAGCTCTCAAAATAACCGTCGAGCACACTGCAAGTACATCATGGAGGAAAATGACGGCAACATGGTACGCTTTCGCTTGGTTTTCGTCGATCGCCATCTTCTCCATAAGTCACAGCGTTCTCAGGGACTTCGCCGCTGCTGGTATCTTCTTAAACCCGACATTACAAACATCGGAGACCTTGCATCCCATATCCAGGAGAGCTTCGGACTTCGTGATAGTATTACTCTATTCATGGATGATTTTGTGTTACCGTCATTCGAATCTACTGGAATTATCACGGATAAGGATATAATTAGGGTAAGGAAGAAGGAAGCCAAGCAAAACAATAATTACAATCTTATCGCTGATCAGCAAGATTTTGAAAATGTAGTACAACATTTGACTTCCAACAATGATCCTTTTTCAGATGGAAAGTCTCTAGGAAATTCACCTGCAAATGGGAGCTACGATAAAGAGATCTTGACTTTTAACATGGAAAATCCAGTTCATTCAGACCCTCATTCTGGCGGTGATGCTGGTTCGACAAAGAGAAAGAAAAAGCGCTCAAAAAAACTTTTAGATTCGGAGGAACAACATGAGGAGATAAGCAGCGAAAATGTAGTTGTGCCTACTAGTAACTCTGATGGGAAAAAGGAAAAACATCATTGTTCTGATGAAGATGAAGATGTTACACCTTTTATAGTTCGCCCCAGGTACAATCATACTCAATCTCAAGAACCCGACACACAACTAGCGGTTGAAACACAGCCATTGCAAGCTGAAATGGGCATAATGGAGGAAGATATGAATTATGAGAATCCTTTTCCACAAACAACTGATAATGATCTGTGTTTTAAGGATGGAGTCCATGTTTCTGATGGGATATTGTCACTCCCCAAACCTGAAGTGTTTTCTTCTAAGCAATTCATCCGCTTTGAGAATCTCCACCCTTTGCGCCGTTTACCAGTGAAAGGTGACATACTAGCATATCGCTTCGTCAAGCCATCTTCATCAGCGCACATTGAACTATCGTCTCCTCAAGTTGGAAATGTTTCATCATTTGACTGCAATACTATTCAAATCATATTGGTCCCTGTGCTGGATTATGGGATTTTAGAGGAGAATCCAAATAAAAGCATTGCTCAACCAAACACTTTTCCATTCAAAGAAGATGGCTCATTAGAGATCGAGTATTTGTCTCTCGTCGATGTGCGATTGTTGAAAGCTCATGATTCTGAAGAAGTTTGTAATAGTGATCAATTTAGAAAAAATAATTGGGAAGAAGCTTTAGCCAAAGGGGGTTGGAATTATCCTAATTCTTCCATTGCAGAGCAGAACAATGGCTGGGGTCAATGGAATTCAAACAAGAGCACCCTAGGAATGTCGCAACCTTTCAAACAACCTAATTCTTCTCTTGCAGGAAGAGGCGTCGGAAGGACTAATTGGGTTCCGAACAGGTACACGAACACTACATCCAGTAGGTTTAATCCAAACTGGAACAACGCACCAAACTGGAATGCTGCTAATAGGAATGATGCCACAAATTTGGACCCACCACCATATGGGAGAAGCAACATTCTATACAATGCAAATGGTAGCCCGGCCGCGCCGCCCTGGTTTCCTTCCCCTACTTACGGAAGAGGAAGGGGAAGGGGAAGGGGAAGGGGAAGATTGCCGATGCAACAGCTGCCCTCCGCTCTTTGGGAGCCTCCTCAAAACCATGCTTTATTTCTTGGCGCTGAATTTTCTGCTCCAGAAAATAATCATCTGTAATGAGATCCATATGACATTATACATATATCACCTTGAACTTCTCGTTTGTGAATTAAAGAGCTGCTTGATTATATTATTTGGAAAATAAAAGGGATTACATCACAGTTAGTCTAAGGAACATAGATAAGCGGGATCTTTTCAAAGGTCATTGCAAGGGGTGATGGGGTGTTGGATGAAACTTGTGCTCTTTATTAAAAGGCTACCTGCTGTAAAGTTGTCTTAAGTTGACATGAGGTGTGATGATACAATTGTTTGTAAAGTTGCCTTAAGTTGGCGCATAGTGTCATGCAGTTTATTAAGGCTACGTGCTACACCTTTTTATAATATTACTCATCTTTTTCAATGCTTTATCTTAAATGTGTGGAGAGCAAGCTTTCATTGAGAAGATTTTGTTATACACATTGTTATTTTAAATGGGCCACCAACAATAACACTTTTT

Network for GWHGAAEX011063

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF15862.4	Coilin_N	9	181	3.70E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.710
SRP064423	SRR2545915	Juvenile tuber	8.920
SRP108465	SRR5643513	five period of Gastrodia elata	4.830
	SRR5643514	five period of Gastrodia elata	4.720
	SRR5643515	five period of Gastrodia elata	3.240
	SRR5643524	five period of Gastrodia elata	4.770
	SRR5643525	five period of Gastrodia elata	1.230
	SRR5643528	five period of Gastrodia elata	0.740
	SRR5643658	five period of Gastrodia elata	0.920
	SRR5643659	five period of Gastrodia elata	6.780
	SRR5643660	five period of Gastrodia elata	6.340
	SRR5643661	five period of Gastrodia elata	6.810
	SRR5643662	five period of Gastrodia elata	6.640
	SRR5643663	five period of Gastrodia elata	5.360
	SRR5643664	five period of Gastrodia elata	5.290
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.210
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.920
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.640
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.780
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.100
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.610
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.740
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.270
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.140
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.140
SRP279888	Gastro	Gastrodia elata tuber	6.05
	Juven	Juvenile tuber	6.67
	Mother_Gastro	Mother tuber of Gastrodia elata	1.52
	Mother_Juven	Mother tuber of Juvenile	2.56