Detail information of GWHGAAEX011065/evm.TU.scaffold_34.120
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0529 | 8.00E-175 | Protein geranylgeranyltransferase type II, alpha subunit |
| nr | gi|743814139|ref|XP_010929943.1| | 0 | PREDICTED: uncharacterized protein LOC105051289 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|O24304|FNTA_PEA | 4.00E-13 | Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha |
| trEMBL | tr|M0T1Y5|M0T1Y5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P26600_001} |
| TAIR | AT4G24490 | 8.00E-175 | RAB geranylgeranyl transferase alpha subunit 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000037 | 5948137 | 5967150 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011065
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01239.21 | PPTA | 89 | 116 | 6.20E-09 |
| PF01239.21 | PPTA | 126 | 150 | 4.90E-06 |
| PF01239.21 | PPTA | 162 | 187 | 8.10E-08 |
| PF01239.21 | PPTA | 207 | 234 | 6.10E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0018342 | Biological Process | protein prenylation |
| GO:0008318 | Molecular Function | protein prenyltransferase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 31.280 |
| SRR2545915 | Juvenile tuber | 20.570 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.750 |
| SRR5643514 | five period of Gastrodia elata | 9.770 | |
| SRR5643515 | five period of Gastrodia elata | 11.190 | |
| SRR5643524 | five period of Gastrodia elata | 9.940 | |
| SRR5643525 | five period of Gastrodia elata | 10.980 | |
| SRR5643528 | five period of Gastrodia elata | 12.520 | |
| SRR5643658 | five period of Gastrodia elata | 13.390 | |
| SRR5643659 | five period of Gastrodia elata | 14.760 | |
| SRR5643660 | five period of Gastrodia elata | 13.600 | |
| SRR5643661 | five period of Gastrodia elata | 14.260 | |
| SRR5643662 | five period of Gastrodia elata | 14.680 | |
| SRR5643663 | five period of Gastrodia elata | 14.270 | |
| SRR5643664 | five period of Gastrodia elata | 13.530 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 18.680 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.610 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.650 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.410 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.530 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.56 |
| Juven | Juvenile tuber | 20.38 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.66 | |
| Mother_Juven | Mother tuber of Juvenile | 20.15 |