Detail information of GWHGAAEX011066/evm.TU.scaffold_34.125
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3304 | 2.00E-53 | Surfeit family protein 5 |
| nr | gi|672156026|ref|XP_008797792.1| | 1.65E-69 | PREDICTED: mediator of RNA polymerase II transcription subunit 22a [Phoenix dactylifera] |
| Swissprot | tr|Q9SA42|MD22A_ARATH | 7.00E-54 | Mediator of RNA polymerase II transcription subunit 22a |
| trEMBL | tr|A0A067E6N1|A0A067E6N1_CITSI | 1.00E-64 | Uncharacterized protein {ECO:0000313|EMBL:KDO46897.1} |
| TAIR | AT1G16430 | 2.00E-53 | Surfeit locus protein 5 subunit 22 of Mediator complex |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000037 | 6024996 | 6034547 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011066
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF06179.11 | Med22 | 26 | 124 | 2.70E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
| GO:0003712 | Molecular Function | transcription cofactor activity |
| GO:0016592 | Cellular Component | mediator complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.010 |
| SRR2545915 | Juvenile tuber | 7.740 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.310 |
| SRR5643514 | five period of Gastrodia elata | 17.750 | |
| SRR5643515 | five period of Gastrodia elata | 14.380 | |
| SRR5643524 | five period of Gastrodia elata | 16.410 | |
| SRR5643525 | five period of Gastrodia elata | 15.880 | |
| SRR5643528 | five period of Gastrodia elata | 12.720 | |
| SRR5643658 | five period of Gastrodia elata | 12.470 | |
| SRR5643659 | five period of Gastrodia elata | 21.130 | |
| SRR5643660 | five period of Gastrodia elata | 23.140 | |
| SRR5643661 | five period of Gastrodia elata | 19.740 | |
| SRR5643662 | five period of Gastrodia elata | 19.690 | |
| SRR5643663 | five period of Gastrodia elata | 18.550 | |
| SRR5643664 | five period of Gastrodia elata | 13.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.730 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.330 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.560 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.660 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.370 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.120 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.860 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.860 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 33.28 |
| Juven | Juvenile tuber | 30.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 25.54 | |
| Mother_Juven | Mother tuber of Juvenile | 23.50 |