Detail information of GWHGAAEX011067/evm.TU.scaffold_34.126
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1561 | 9.00E-40 | CCAAT-binding factor, subunit B (HAP2) |
| nr | gi|695020667|ref|XP_009397392.1| | 1.54E-66 | PREDICTED: nuclear transcription factor Y subunit A-7-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q84JP1|NFYA7_ARATH | 1.00E-45 | Nuclear transcription factor Y subunit A-7 |
| trEMBL | tr|M0STS7|M0STS7_MUSAM | 6.00E-67 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P31650_001} |
| TAIR | AT2G34720 | 9.00E-40 | nuclear factor Y, subunit A4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000037 | 6038955 | 6066367 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011067
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02045.14 | CBFB_NFYA | 107 | 162 | 1.20E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YA |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08064 | NFYA | Antigen processing and presentation | map04612 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0016602 | Cellular Component | CCAAT-binding factor complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 25.470 |
| SRR2545915 | Juvenile tuber | 25.370 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.560 |
| SRR5643514 | five period of Gastrodia elata | 19.040 | |
| SRR5643515 | five period of Gastrodia elata | 19.160 | |
| SRR5643524 | five period of Gastrodia elata | 19.660 | |
| SRR5643525 | five period of Gastrodia elata | 20.970 | |
| SRR5643528 | five period of Gastrodia elata | 16.860 | |
| SRR5643658 | five period of Gastrodia elata | 20.520 | |
| SRR5643659 | five period of Gastrodia elata | 21.960 | |
| SRR5643660 | five period of Gastrodia elata | 19.670 | |
| SRR5643661 | five period of Gastrodia elata | 21.530 | |
| SRR5643662 | five period of Gastrodia elata | 20.410 | |
| SRR5643663 | five period of Gastrodia elata | 18.820 | |
| SRR5643664 | five period of Gastrodia elata | 21.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.440 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.740 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.200 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.830 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.770 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.960 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.930 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.980 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.900 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.990 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.990 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 24.60 |
| Juven | Juvenile tuber | 27.31 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 25.66 | |
| Mother_Juven | Mother tuber of Juvenile | 29.78 |