Detail information of GWHGAAEX011072/evm.TU.scaffold_340.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743866763|ref|XP_010905142.1|9.11E-137PREDICTED: alpha-humulene synthase-like isoform X2 [Elaeis guineensis]
Swissprottr|Q6Q3H3|TPSGD_VITVI5.00E-130(-)-germacrene D synthase
trEMBLtr|O81634|O81634_ELAOL5.00E-137Sesquiterpene synthase {ECO:0000313|EMBL:AAC31570.2}
TAIRAT5G239607.00E-91terpene synthase 21

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000003341261821449-
Transcript Sequence

Network for GWHGAAEX011072

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01397.20Terpene_synth502341.90E-44
PF03936.15Terpene_synth_C2665039.30E-80
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15803GERD Sesquiterpenoid and triterpenoid biosynthesis map00909

Gene Ontology

GO term OntologyName
GO:0016829Molecular Functionlyase activity
GO:0000287Molecular Functionmagnesium ion binding
GO:0010333Molecular Functionterpene synthase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.380
SRR2545915Juvenile tuber8.040
SRP108465SRR5643513five period of Gastrodia elata21.830
SRR5643514five period of Gastrodia elata80.100
SRR5643515five period of Gastrodia elata21.610
SRR5643524five period of Gastrodia elata71.600
SRR5643525five period of Gastrodia elata0.000
SRR5643528five period of Gastrodia elata0.050
SRR5643658five period of Gastrodia elata0.080
SRR5643659five period of Gastrodia elata3.540
SRR5643660five period of Gastrodia elata20.890
SRR5643661five period of Gastrodia elata4.460
SRR5643662five period of Gastrodia elata0.140
SRR5643663five period of Gastrodia elata0.220
SRR5643664five period of Gastrodia elata0.040
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_190.510
SRR6049655Rhizomagastrodiae_C368-T10_good_189.970
SRR6049656Rhizomagastrodiae_C368-T07_good_1112.770
SRR6049657Rhizomagastrodiae_C368-T07_good_1163.780
SRR6049658Rhizomagastrodiae_C368-T04_good_1136.170
SRR6049659Rhizomagastrodiae_C368-T04_good_1160.680
SRR6049660Rhizomagastrodiae_C368-T01_good_1162.260
SRR6049661Rhizomagastrodiae_C368-T04_good_1221.360
SRR6049662Rhizomagastrodiae_C368-T01_good_1127.000
SRR6049663Rhizomagastrodiae_C368-T01_good_1124.210
SRR6049664Rhizomagastrodiae_C368-T10_good_149.920
SRR6049665Rhizomagastrodiae_C368-T10_good_149.920
SRP279888GastroGastrodia elata tuber 0.31
JuvenJuvenile tuber62.38
Mother_GastroMother tuber of Gastrodia elata 0.25
Mother_JuvenMother tuber of Juvenile 22.56