Gene detail

Detail information of GWHGAAEX011080/evm.TU.scaffold_346.2

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|336121871\|ref\|YP_004576646.1\|	1.00E-33	RNA-metabolising metallo-beta-lactamase [Methanothermococcus okinawensis IH1]
KOG	KOG1137	0	mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit)
nr	gi\|743815335\|ref\|XP_010930313.1\|	0	PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I [Elaeis guineensis]
Swissprot	tr\|Q9C952\|CPSF3_ARATH	0	Cleavage and polyadenylation specificity factor subunit 3-I
trEMBL	tr\|A5AK91\|A5AK91_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN71414.1}
TAIR	AT1G61010	0	cleavage and polyadenylation specificity factor 73-I

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000352	38631	40268	+

Transcript Sequence
>GWHTAAEX011080 ATGTTTATGGTTGACATTGCTGGCGTCCGAGTTCTTTACACTGGCGATTATTCTCGCGAGGAAGATCGTCACCTTCGTGCTGCTGAAACCCCACAGTTCTCTCCTGATATATGCATCATAGAGTCCACGTATGGTGTGCAGCTCCACCAGCCACGCCTTGTACGGGAGAAGCGCTTCACAGATGTGATTCATTCAACCGTATCTCAAGGAGGGCGGGTGCTTATTCCAGCATTTGCTCTGGGGAGAGCTCAGGAGCTCCTCCTCATCTTGGATGAGTATTGGTCCAGCCATCTAGAGCTCCTCCTCATCTTGGATGATGAGTATTGGTCCAGCCATCCGGAGCTCCACAACATCCCCATCTATTATGCCTCCCCTCTGGCTAAGCGATGCATGGCCGTTTACCAGACGTACATCAATGCGATGAACGAGAGGATACGGAACCAATTTGCAAACTCAAATCCCTTTGATTTCAAACACATATCCCCTTTGAAGAGTATAGAAAACTTTGATGATGTCGGCCCATCAGTGGTGATGGCAAGCCCAGGTGGTTTGCAGAGTGGCCTTTCAAGGCAACTGTTTGATAAGTGGTGCACAGACAAGAAGAATGCCTGTGTGATTCCTGGTTATGTAGTGGAAGGGACACTTGCAAAGACCATAATCAACGAGCCCAAAGAGGTGACTTTATTGAACGGTCTCACTGCTCCTCTCAGCATGCAGGTGTACTACATTTCCTTCTCTGCTCACGCTGACTTTGCTCAGACAAGCACGTTCTTGAAGGAACTCATGCCTCCCAACATAATTCTTGTCCATGGAGAAGCGAATGAGATGACCAGGCTCAAACAAAAGCTCATTTCCCAATTCTCTGATCAAAATACGAAGATAATGTCACCAAAGAATTGCCAGTCTGTGGAGATGTACTTTAGCTCTGAAAAAATGGCTAAGACAATTGGAAGGCTGGCTGAGAGGACGCCTGAAGTTAGTGATATCGTCAGTGGAGTGCTGGTTAAGAAAGGCTTCACATATCAGATTATGGCATCAGAAGACCTTCATGTTTTCTCTCAGCTGTCCACGGCAAGCATAACCCAGAGGATCTCCGCACCTTATACTGGTGCTTTTGGGGTCATAAAGCACAGGCTGAGTCAGATGTATGAAAGTGTGGTGCCCTCCCTGCAGTCGGAAGATGGCGAAGAGGCAGATGTCCCCACTCTGATTGTTCACGAGAGGGTAACGATAAGGCAGCAGACTGAGAACCTTGTGAGCTTGCAGTGGTCTTCTGATCCTATCAGTGATATGGTCTCAGATTCAATTGTGGCTTTAATATTGAACATATACAGGGAAGGTCCTAAAGTAATAATTCCTGCTGCTGCAGCAGAGAACAGCAACAACCAGAGGGGTGAGGAGGAGACGGAAAGGATGGCGTGGAAGGTAACATTTACCTTGCTGACTTCCCTCTTTGGTGATGTGAAGGTTGGTGAGGAAGGGAAACTGATCATCACCGTCGATGGCGATGTTGCTTGTTTGGATGGGAAGAATGGCGAAGTTGAGTGCCAGAATGAGGCTCTCAAGGACAGAGTCAGGACGGCATTTCAGCGCATTCAAAATGTTGTCAGGCCTATCTCGCTCTCATCCTCGCCTTAA

Network for GWHGAAEX011080

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module9

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10996.7	Beta-Casp	98	219	1.30E-27
PF07521.11	RMMBL	233	287	5.90E-18
PF11718.7	CPSF73-100_C	329	538	2.40E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14403	CPSF3, YSH1	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.210
SRP064423	SRR2545915	Juvenile tuber	3.070
SRP108465	SRR5643513	five period of Gastrodia elata	3.910
	SRR5643514	five period of Gastrodia elata	3.730
	SRR5643515	five period of Gastrodia elata	2.670
	SRR5643524	five period of Gastrodia elata	3.320
	SRR5643525	five period of Gastrodia elata	2.530
	SRR5643528	five period of Gastrodia elata	1.600
	SRR5643658	five period of Gastrodia elata	1.240
	SRR5643659	five period of Gastrodia elata	5.180
	SRR5643660	five period of Gastrodia elata	7.580
	SRR5643661	five period of Gastrodia elata	5.110
	SRR5643662	five period of Gastrodia elata	7.000
	SRR5643663	five period of Gastrodia elata	6.040
	SRR5643664	five period of Gastrodia elata	5.770
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.770
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.660
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.310
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.490
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.840
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.170
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.690
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.680
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.270
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.270
SRP279888	Gastro	Gastrodia elata tuber	12.37
	Juven	Juvenile tuber	8.43
	Mother_Gastro	Mother tuber of Gastrodia elata	4.78
	Mother_Juven	Mother tuber of Juvenile	4.27