Gene detail

Detail information of GWHGAAEX011087/evm.TU.scaffold_35.7

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|13476230\|ref\|NP_107800.1\|	1.00E-82	cytochrome C oxidase subunit III [Mesorhizobium loti MAFF303099]
KOG	KOG4664	7.00E-152	Cytochrome oxidase subunit III and related proteins
nr	gi\|57282235\|emb\|CAD32346.1\|	1.12E-165	cytochrome oxidase subunit 3 [Spiranthes spiralis]
Swissprot	tr\|Q03227\|COX3_VICFA	5.00E-160	Cytochrome c oxidase subunit 3
trEMBL	tr\|Q5K578\|Q5K578_9ASPA	4.00E-166	Cytochrome c oxidase subunit 3 {ECO:0000256\|RuleBase:RU003375}
trEMBL	tr\|Q5K578\|Q5K578_9ASPA	7.00E-121	Cytochrome c oxidase subunit 3 {ECO:0000256\|RuleBase:RU003375}
TAIR	AT2G07687	7.00E-152	Cytochrome c oxidase, subunit III

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000034	569075	574519	-

Transcript Sequence
>GWHTAAEX011087 ATGTCACAGAACCGCCGGGCCCCTTTCTTGAGAGACAACACCCAGCTTCAGCTTCACACTTTTCGACTCTTGGTTCAAGATGGAAAGCTAAGAGAAAGAAAAGCTAAAGGGATTCAGCAACTCCCACCTTGCTCTAGACCCGGAACTGCAATCAAAGTAGTGGTCCTCATTGCATCGATGATGGTTCCACGTATGCCGATCGGTTTCCTGTTCGTCTATTCCGAGAGTCTAAAAACATTGATAAACTCCACACTCTTTCTTACTGCCCAGGTTTCAGACATTTCTGCCTGCTCAGCTGCCTCATGGCCTTTCATCAAAAGCCGAATGCACAGCTTCACTTCAGACTCAGATACGCGGGAAGGTGATGAGCCTTCAATTGAAATGAGCTTGAATCCCTCTTTTTTTGTATATCCAAGTCCATGGCCTCTTTCGGGTTCACTCGGAGCTTTGGCAACCACCGTAGGAGGTGTGATGTACATGCACCCCCTTGAAATGGGTGCAACACTTCTAAGTTTGGGCCTAATCTTTCTACTATATACCATGTTCGTATGGTGGCGCGATGTTCTACGTGAATCCACGTTGGAAGGACATCATACAAAAGCTGTACAATTAGGACCTCGATACGGTTCTATTCTGTTCATAGTCTCGGAGGTTATGTTCCTTTTTGCTTTTTTTTGGGCTTCTTCTCATTCTTCTTTGGCACCTACGGTAGATATCGGAGGTCTTTGGCCCCCAAAGGGGATTGGGGTTTTAGATCCTCGGGAAATACCTTTTCTTAATACTCTTATTCTCCCTTCATCCGGAGCTGCCGTAACTTGGGCTCATCATGCTATACTCGCGGGGAAGGCGCTAGGAGCAGTTGTAGCTTTATTAGCTACCGTTTCACTGGCTCTAGTATTCACTGGCTTTCAAGGAATGGAATATTACCAAGCAACCTCCACGATTTCGGATAGTCTTTATTGTTCTACCTTTTTCTTAGCAACTGGCTTTCATGGTTTTCATGTGATTATAGATCCAAGTCCATGGCCTCTTTCGGGTTCACTCGGAGCTTTGGCAACCACCGTAGGAGGTGTGATGTACATGCACCCCCTTGAAATGGGTGCAACACTTCTAAGTTTGGGCCTAATCTTTCTACTATATACCATGTTCGTATGGTGGCGCGATGTTCTACGTGAATCCACGTTGGAAGGACATCATACAAAAGCTGTACAATTAGGACCTCGATACGGTTCTATTCTGTTCATAGTCTCGGAGGTTATGTTCCTTTTTGCTTTTTTTTGGGCTTCTTCTCATTCTTCTTTGGCACCTACGGTAGATATCGGAGGTCTTTGGCCCCCAAAGGGGATTGGGGTTTTAGATCCTCGGGAAATACCTTTTCTTAATACTCTTATTCTCCCTTCATCCGGAGCTGCCGTAACTTGGGCTCATCATGCTATACTCGCGGGGAAGGCGCTAGGAGCAGTTGTAGCTTTATTAGCTACCGTTTCACTGGCTCTAGTATTCACTGGCTTTCAAGGAATGGAATATTACCAAGCACCCTCCACGATTTCGGATAGTCTTTATGGTTCTACCTTTTTCTTAGCAACTGGCTTTCATGGTTTTCATGTGATTATAGGTACTCTCTTCTTGATCATATGTTGTATTCGCCAATATCTTGGTCATCTGACCAAGGAGCATCACGTTGGCTTTGAAGCAGCTGCATGGTACTGGCATTTTGTAGACGTGGTTCGGTTATTCCCATTTGTCTCTATCTATTGGTGGGGAGCGAAGCTAGGGGTGTAGCTGCTATACTTTGAAGTGGCGAGATTTAGAATCTGTTTCAAAGAATAATTCATATGAAAGCAAGGCCGCGACGAATTCTCTCAAGAGTGAGACGAG

Network for GWHGAAEX011087

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00510.17	COX3	134	337	6.30E-74
PF00510.17	COX3	336	588	5.60E-101

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02262	COX3	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Cardiac muscle contraction	map04260
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0022904	Biological Process	respiratory electron transport chain
GO:0004129	Molecular Function	cytochrome-c oxidase activity
GO:0015002	Molecular Function	heme-copper terminal oxidase activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.000
SRP064423	SRR2545915	Juvenile tuber	0.180
SRP108465	SRR5643513	five period of Gastrodia elata	0.080
	SRR5643514	five period of Gastrodia elata	0.030
	SRR5643515	five period of Gastrodia elata	0.040
	SRR5643524	five period of Gastrodia elata	0.040
	SRR5643525	five period of Gastrodia elata	0.160
	SRR5643528	five period of Gastrodia elata	0.210
	SRR5643658	five period of Gastrodia elata	0.060
	SRR5643659	five period of Gastrodia elata	0.030
	SRR5643660	five period of Gastrodia elata	0.150
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.090
	SRR5643664	five period of Gastrodia elata	0.170
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.800
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.460
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.520
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.210
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.750
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.130
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.350
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.780
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.320
SRP279888	Gastro	Gastrodia elata tuber	0.33
	Juven	Juvenile tuber	0.08
	Mother_Gastro	Mother tuber of Gastrodia elata	0.11
	Mother_Juven	Mother tuber of Juvenile	0.38