Gene detail

Detail information of GWHGAAEX011093/evm.TU.scaffold_35.19

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|89896669\|ref\|YP_520156.1\|	1.00E-63	hypothetical protein DSY3923 [Desulfitobacterium hafniense Y51]
KOG	KOG0253	2.00E-160	Synaptic vesicle transporter SV2 (major facilitator superfamily)
nr	gi\|743804232\|ref\|XP_010927137.1\|	0	PREDICTED: organic cation/carnitine transporter 7 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q940M4\|OCT7_ARATH	5.00E-161	Organic cation/carnitine transporter 7
trEMBL	tr\|K4A922\|K4A922_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si035378m}
TAIR	AT3G13050	2.00E-160	Major facilitator superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000034	1562824	1569350	-

Transcript Sequence
>GWHTAAEX011093 ATGGGAAACGAGAGGGGTGCGTACACTGTGGATGAAGCGATGGAGTCAATGGGATTTGGGAAGTTCCAAGTCCTGGTTCTTCTGTACGCTGGGATTGGTTATTCTTCGGAAGCAATGGAGCTTATGATTCTCTCATTTATTGGCTCCCCTATTCGGTCTGAATGGAACCTTTCCCCTCAGCAAGAGAGTTTAATCTCAAGTGTAGTCTTTGCCGGTATGCTTTTGGGGCAAATTTCTTGGGGCTTCATTTCTGACAACTACGGAAGGAGGCAAGCCCTCTCTATACCTTTCAATTTCATTCAACAGAAATGTTTCTTCTTCTCTATACTAGTGACTAGTGTTGCTGGTTTTCTGAGTGCATTTTCCCCCAACTATATTACTCTAGTCATCCTTCGATGCTTTGTTGGATATGGGTTGGGCGGTGGGTCCGTGCTGCTCGCTTGGTTTCTAGAGCTTGTTCCTGCTACAAGTAGAGGCACTTGGATGACCGTCTTTTCTTTCTTTTGGAGCTTGGGCACCATTCTTGAGGTCACAATTGCATGGGTAGTCATGCCAAACTTAGGTTGGAGATGGCTGCTTGTATTATCTACTATTCCAGCCCTCTTCCTTTTTGTATTTTATAGCTTTACCCCTGAATCACCAAGATACCTTTGCTCTAAAGGAAAAACTTCTGAGGCCATGAAAATCTTAGAGAAAATGGCTAGAACAAACAACAAGTTGTTGCCTTCTGGCTCTCTTATTTTTGATGCCAGAGGAGGAACTAGTGGAGATGAAATTGATGGGAAAACAAAGATTGGGAATTTTAGCACAATTTGTAATCTGTTTTCCCCAAAATTGCTTAAATCAACTATTTTGCTTTGGATTTCTTTCTTTGGAAACATTTTTGGATATTATGGTATTGTTCTACTAACTTCAGCGCTGAGTAATAGAAATATGACATGCTCTTCTCCAAAGCTAAGGATTAAAGGCTCTGATGATGTGAATCTTTATAAGGATGTTTTTATCACAAGTTTTGCTGAGTTGCCCGGGCTAGTTTTGTTGGCTTTAATGGTTGATAGGCTTGGCAGAAAACTTTCAATGGCAGTCATGCTTTCTTGGGCTTTTGTGTTTCTAGTCCCTTTGGCATTTCCTCGAACTGAAGGCTTAACAATAGCCCTTTTGTTTTGTGCTCGATTATGCATCACCGCAAGCACAGCTGGATTGTGCATATATACTCCAGAGATTTATCCAACATCATTAAGGAGCTATGGTTTTGGCACAGCAAGTGCTATAGGTAGGATTGGAGGAATGATTTCTCCTCTTGTAGCTATAGCATTGGTAGATAATTGCCATCAGATAGAAGCCATTCTTCTCTTTGAAGTTGTGATCAGCCTTACGGTTATAGCTACTTCTCTCTTTCCTCTCGAAACAAAGGGCCGCAACCTCGATGATTCTTTGCAGAGTTTGATCTGCTAAAAAAACATTAAATTATTTTTGTATTATATTCATATTGCAAAGGCATGCTAGTTTGATTTCTCATGGCTTAGAACCAATTAATATACTCAATAATAGTTTAGTGTTTTTTGTAAAGTAGTACATGTATGTATAGAGGTTGATCCAACCAAATGATGGTGCTCCTCATGTTAAATAA

Network for GWHGAAEX011093

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00083.23	Sugar_tr	60	476	2.00E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0022857	Molecular Function	transmembrane transporter activity
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.000
SRP064423	SRR2545915	Juvenile tuber	0.000
SRP108465	SRR5643513	five period of Gastrodia elata	3.230
	SRR5643514	five period of Gastrodia elata	12.820
	SRR5643515	five period of Gastrodia elata	6.540
	SRR5643524	five period of Gastrodia elata	13.200
	SRR5643525	five period of Gastrodia elata	7.730
	SRR5643528	five period of Gastrodia elata	4.520
	SRR5643658	five period of Gastrodia elata	2.230
	SRR5643659	five period of Gastrodia elata	0.900
	SRR5643660	five period of Gastrodia elata	2.390
	SRR5643661	five period of Gastrodia elata	3.560
	SRR5643662	five period of Gastrodia elata	0.440
	SRR5643663	five period of Gastrodia elata	1.390
	SRR5643664	five period of Gastrodia elata	0.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.070
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.980
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.840
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.530
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.260
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.590
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.480
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.360
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.360
SRP279888	Gastro	Gastrodia elata tuber	1.00
	Juven	Juvenile tuber	0.67
	Mother_Gastro	Mother tuber of Gastrodia elata	52.99
	Mother_Juven	Mother tuber of Juvenile	9.95