Detail information of GWHGAAEX011096/evm.TU.scaffold_35.32


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|476001833|gb|AGI62058.1|0SQUAMOSA promoter-binding-like 10 [Erycina pusilla]
Swissprottr|Q5Z818|SPL12_ORYSJ6.00E-103Squamosa promoter-binding-like protein 12
trEMBLtr|M9QZ76|M9QZ76_9ASPA0SQUAMOSA promoter-binding-like 10 {ECO:0000313|EMBL:AGI62058.1}
TAIRAT5G432701.00E-51squamosa promoter binding protein-like 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003422778922300281+
Transcript Sequence

Network for GWHGAAEX011096

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03110.13SBP1772501.80E-30
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySBP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.780
SRR2545915Juvenile tuber86.740
SRP108465SRR5643513five period of Gastrodia elata22.060
SRR5643514five period of Gastrodia elata52.080
SRR5643515five period of Gastrodia elata46.440
SRR5643524five period of Gastrodia elata51.240
SRR5643525five period of Gastrodia elata44.760
SRR5643528five period of Gastrodia elata38.620
SRR5643658five period of Gastrodia elata60.640
SRR5643659five period of Gastrodia elata48.250
SRR5643660five period of Gastrodia elata44.980
SRR5643661five period of Gastrodia elata51.570
SRR5643662five period of Gastrodia elata57.250
SRR5643663five period of Gastrodia elata72.090
SRR5643664five period of Gastrodia elata50.060
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.230
SRR6049655Rhizomagastrodiae_C368-T10_good_115.130
SRR6049656Rhizomagastrodiae_C368-T07_good_115.770
SRR6049657Rhizomagastrodiae_C368-T07_good_117.930
SRR6049658Rhizomagastrodiae_C368-T04_good_113.450
SRR6049659Rhizomagastrodiae_C368-T04_good_110.800
SRR6049660Rhizomagastrodiae_C368-T01_good_111.350
SRR6049661Rhizomagastrodiae_C368-T04_good_19.900
SRR6049662Rhizomagastrodiae_C368-T01_good_128.580
SRR6049663Rhizomagastrodiae_C368-T01_good_121.340
SRR6049664Rhizomagastrodiae_C368-T10_good_113.710
SRR6049665Rhizomagastrodiae_C368-T10_good_113.710
SRP279888GastroGastrodia elata tuber 46.10
JuvenJuvenile tuber54.34
Mother_GastroMother tuber of Gastrodia elata 47.86
Mother_JuvenMother tuber of Juvenile 37.45