Gene detail

Detail information of GWHGAAEX011097/evm.TU.scaffold_35.34

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG3702	9.00E-20	Nuclear polyadenylated RNA binding protein
nr	gi\|672177945\|ref\|XP_008809086.1\|	1.12E-128	PREDICTED: zinc finger CCCH domain-containing protein 14 [Phoenix dactylifera]
trEMBL	tr\|W5BX02\|W5BX02_WHEAT	3.00E-80	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_2DL_8787DCFD7.1}
TAIR	AT3G12640	9.00E-20	RNA binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000034	2399665	2425431	+

Transcript Sequence
>GWHTAAEX011097 GGGCTAGATGAATCACTCCATCTGTACTCTCCCTCGCCTCTCTCCCATCCTTCCTCTCTTTTAAGATTCCGGCTACGTATGCAGCGGAGGCGGTGGCGGTATGGGGGAGAGCTTATATGCATCAGAGTCGATGTCGTTGAAGATGGATAGGCTCTCTCCGGAGGCCGCGAGGTTGCGAGAAGTGGTCTCCAAGAAACTCTCGGACTTCCTCGGGGATTTCTCCGACGACGTTCTGGCGGAGTACATTGTGGTTCTTGTTTGTAATGGCAAGCAACAAAATCAAGTATGCAGTGACCTACAGGCATTTTTAGGGGATGAGAGCAGGACATTTGTAACTTGGCTTTGGGATTATATCTCCAACAAAATCATTCCAAAGGAGACTTCTGATTTATCTGATCCAGTATCCAAAGTAATGACTAATCTTGGTAACAGCTTGGACAGGGAGTATAAAAGTACCATGCTTACAGATCATGATGCTCATTCAGCTGGAAAACCAAATACTAAGAATGAATCTTTGGAACTGCCACACTGCCGCACAAATCCAGATCATTTAAAACATGCCCAAACATCAGAAAGACTCCAACTTTGCCCCTCTAATTTAGCTGAACATTCAACTGTATTAGATATGGTGGAGATAAAGGTAGAACAGAAAGCCCTTCATCGAAGTTCCAGTTCAAAGAGCACTAATTACACTACAGTTGTGAATAATATATCATCTTCAATTGCAAGCTTTCACGAAGTTTCATCAATTAGCAAGCTGCATCCTTTGCAATACGAACTTCAAAATCAGAAGATATCAAAAAATAGTTCCAGTTCTGTAGTTCCCCAATGCATTCAGGAACCAAAGACAGAACAAACAGCAATGTGTTTACGATCTGTTATTGCAGAAGAGCATTCATTAAGACCTTCATCTTGTAAAAATTCTACTGAAGCAAGGCTGCCTCCAACTGCTATTGATGAACTGCCGCATCAAGCAGCTCGCGTACGTGGCAATGTTTGGGATAGATTAGGAAGGCCTCATTTAGATGATCAAACGCTATTTAAAGAAGAGAATTCAGATCGTCTTAATATATTTGATATTGTAAAAGTAGACAGTCAAGAACCTCAAAATCCCAGATTGACAAGGATTTCATCAGTAACTAGCACAACTAGAAATTTGAATAGACAGTCTCTTGCATTTGACAGAGGTGATGCAGATGAAGGCATACCAGTTGAACATTATGGAGATAATAGAACTCCAGATAAAGTGGTTAATGCAAATGCATTGAAAAGGAAGAGAGAGATAAGTGAGCATACCTCAAACAGTGGTTCATTTTATAAGGAGAATTATCTTCAAGATAAAGGACATTCTCAGCATCAAGAACTATCAATACTTGCCTTGCAGAACAATCAACAAAGGCCAAACTCAAGCTCTACTGTGGTTTCTCAATCTCAAGTGAAAAAGAATTCAGTGTCTTTACCTATAGAGATTCCAGTTCCCATAAGTACAGCCATACCTGCTAATTCTAAATCTCAGAGTGTAGCAAACAATGGGAATGTCGACCAGAAGCCTGAGCAATATGATGTGCTTGCTGTTAAATTAAAGCTTCGTCAGATTGAAATGGATTTATTGAAGCTTCGTTCAAAGAAGCTGGGGCAGAGCTTTGATGGTAAACAAAACACATCTTCAGTTTTGCAGAATGTATCCGAGGAAGGTATCGAGTCAAGGACGGTTCTGGTGACAAATGTACACTTTGCGGCAACCAGAGAATCTTTGGTTTCACATTTTGGAATATGTGGCCAAATTTCTAAAGTCATAATGTTAACTGATGCTGTAACCGGTTTACCTAAAGGGGCGACATATATTGTTTTTGCGAGCAAGGACTCTGCTGAAAAGGCAATTTCTCTTAGCGGCACGTCCTTCTTTTCAAGGATTCTTAAGGTTATCAGGAAAGTGGAAGTCCCTTCAGATTTCTTGGTTCCATCGCAGCTGCAGCAGCAGCAGGCTGTGAAGCAGCTGCAGCCATTTTATGCGCAGGCTTATGGGAAGGGTCCTCCTCCCATGCAGAAGAAACAACACACGAGCTCTCACCTTCAGTGGAGGCGCGATCAGCGCTCCAGCAATGGCGGACCTCCGGCCTCTGTTGATTAGGATGACATTTGTTTTCCTACTTTACGGTAATTTTTTTTGAAAAGATATGCATACTGTCATTATTGTACAAGTAGTTTATTATATATATATCTCGTGGCTTTCTTTCTATTGTGGTAACTAGGATGCTTGTTCCCGTGGTAGTGATAAAAGGCTGGGAGTACCACATAATATATATAGCCTTGAGAATCAGCAGTTTCCCAAAAAGAAGTTTCTATTGCTGTTTTTTTTATTCATGTTAGAAGGAATTTTGTGCTCAGTATGAGGTAGTTATAGCTATATAAAGGAATTGCTTCAAAATTGCTATAAAGTTGTTCCTTTTTGAATGTTCTATTGCTACATTGTTGTGCATGAC

Network for GWHGAAEX011097

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01480.16	PWI	25	87	1.70E-07
PF00076.21	RRM_1	538	606	4.00E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006397	Biological Process	mRNA processing
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	67.670
SRP064423	SRR2545915	Juvenile tuber	62.000
SRP108465	SRR5643513	five period of Gastrodia elata	20.970
	SRR5643514	five period of Gastrodia elata	21.150
	SRR5643515	five period of Gastrodia elata	17.970
	SRR5643524	five period of Gastrodia elata	18.620
	SRR5643525	five period of Gastrodia elata	15.570
	SRR5643528	five period of Gastrodia elata	13.770
	SRR5643658	five period of Gastrodia elata	19.100
	SRR5643659	five period of Gastrodia elata	20.940
	SRR5643660	five period of Gastrodia elata	20.250
	SRR5643661	five period of Gastrodia elata	16.230
	SRR5643662	five period of Gastrodia elata	19.110
	SRR5643663	five period of Gastrodia elata	20.240
	SRR5643664	five period of Gastrodia elata	21.710
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.800
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	31.790
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.860
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	39.460
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	35.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	41.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	38.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	31.700
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.150
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	29.950
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.870
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.870
SRP279888	Gastro	Gastrodia elata tuber	30.44
	Juven	Juvenile tuber	28.85
	Mother_Gastro	Mother tuber of Gastrodia elata	11.51
	Mother_Juven	Mother tuber of Juvenile	15.70